P-POD: Princeton Protein Orthology Database: GO3/Para87

This family has 107 members: 18 Arabidopsis thaliana, 8 Caenorhabditis elegans, 6 Danio rerio, 8 Dictyostelium discoideum, 10 Drosophila melanogaster, 2 Escherichia coli, 11 Gallus gallus, 11 Homo sapiens, 11 Mus musculus, 9 Rattus norvegicus, 6 Saccharomyces cerevisiae, 7 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Para87
107 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_172152.1 · TAIR:locus:2009200 (F12K11.4 · F12K11_4 · NIH · AT1G06670)DEIH-BOX RNA/DNA HELICASE · NUCLEAR DEIH-BOXHELICASE⌘
A. thalianaNCBI:NP_174527.2 · TAIR:locus:2033723 (ESP3 · AT1G32490 · F5D14.27 · EMB2733 · F5D14_27)ENHANCED SILENCING PHENOTYPE 3 · EMBRYO DEFECTIVE 2733⌘
A. thalianaNCBI:NP_850154.2 · TAIR:locus:2052841 (T11J7.19 · ATVT-1 · HVT1 · AT2G30800)HELICASE IN VASCULAR TISSUE AND TAPETUM⌘
A. thalianaNCBI:NP_196805.1 · TAIR:locus:2182340 (T24H18.180 · AT5G13010 · EMB3011 · T24H18_180)embryo defective 3011⌘
A. thalianaNCBI:NP_680142.2 · TAIR:locus:504954904 (AT5G04895)⌘
A. thalianaNCBI:NP_191790.1 · TAIR:locus:2095989 (T12C14.10 · AT3G62310)⌘
A. thalianaNCBI:NP_176102.1 · TAIR:locus:2196255 (T15M6_6 · T15M6.6 · AT1G58050)⌘
A. thalianaNCBI:NP_182247.1 · TAIR:locus:2065210 (T8I13.9 · AT2G47250)⌘
A. thalianaNCBI:NP_173961.3 · TAIR:locus:2197965 (T1K7.25 · T1K7_25 · AT1G26370)⌘
A. thalianaNCBI:NP_193401.1 · TAIR:locus:2129036 (DL4365C · FCAALL.3 · AT4G16680)⌘
A. thalianaNCBI:NP_175298.2 · TAIR:locus:2008144 (F11I4_16 · AT1G48650 · F11I4.16)⌘
A. thalianaNCBI:NP_176103.2 · TAIR:locus:2196265 (T15M6_7 · T15M6.7 · AT1G58060)⌘
A. thalianaNCBI:NP_178223.2 · TAIR:locus:2038796 (AT2G01130 · F10A8.28)⌘
A. thalianaNCBI:NP_189288.1 · TAIR:locus:2088847 (AT3G26560 · MFE16.8)⌘
A. thalianaNCBI:NP_181077.3 · TAIR:locus:2062492 (T32F12.28 · MEE29 · AT2G35340 · T32F12_28)maternal effect embryo arrest 29⌘
A. thalianaNCBI:NP_850255.1 · TAIR:locus:2039280 (F11F19_17 · F11F19.17 · AT2G35920)⌘
A. thalianaNCBI:NP_567558.1 · TAIR:locus:505006494 (AT4G18465)⌘
A. thalianaNCBI:NP_564296.1 · TAIR:locus:2010549 (F13K9_28 · AT1G27900 · F13K9.28)⌘
C. elegansWB:WBGene00018967 (F56D2.6) · UniProtKB:Q20875⌘
C. elegansWB:WBGene00003392 (C04H5.6 · mog-4) · UniProtKB:O45244 (DHX16_CAEEL · C04H5.6 · mog-4)Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4⌘⌘
C. elegansWB:WBGene00022056 (Y67D2.6) · UniProtKB:Q9BKQ8⌘
C. elegansWB:WBGene00004355 (rha-1 · T07D4.3) · UniProtKB:Q22307⌘
C. elegansWB:WBGene00003389 (K03H1.2 · mog-1) · UniProtKB:P34498 (K03H1.2 · MOG1_CAEEL · mog-1)Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1⌘⌘
C. elegansWB:WBGene00003393 (EEED8.5 · mog-5) · UniProtKB:Q09530 (EEED8.5 · mog-5 · MOG5_CAEEL)Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5⌘⌘
C. elegansWB:WBGene00020263 (T05E8.3) · UniProtKB:O01598⌘
C. elegansWB:WBGene00009922 (F52B5.3) · UniProtKB:Q20644⌘
D. rerioENSEMBL:ENSDARP00000071318
D. rerioENSEMBL:ENSDARP00000070535
D. rerioENSEMBL:ENSDARP00000008078
D. rerioENSEMBL:ENSDARG00000061922 · UniProtKB:A3KQN8
D. rerioENSEMBL:ENSDARG00000063419 · UniProtKB:Q1ECW4
D. rerioUniProtKB:Q7ZVV8 · ZFIN:ZDB-GENE-030131-8589 (dhx16)DEAH (Asp-Glu-Ala-His) box polypeptide 16⌘
D. discoideumNCBI:EAL73211.1 · dictyBase:DDB_G0267516 (dhx57)DEAD/DEAH box helicase, RWD domain-containing protein⌘
D. discoideumUniProtKB:Q54NJ4 · dictyBase:DDB_G0285213 (prp43 · dhx15)DEAD/DEAH box helicase, putative RNA splicing factor⌘
D. discoideumUniProtKB:Q54MH3 · dictyBase:DDB_G0285937 (dhx16)DEAD/DEAH box helicase, putative RNA splicing factor⌘
D. discoideumUniProtKB:Q54F05 · dictyBase:DDB_G0291183 (dhx8 · prp22)DEAD/DEAH box helicase, putative RNA splicing factor⌘
D. discoideumUniProtKB:Q54MH4 · dictyBase:DDB_G0285843 (dhx38 · helD · prp16)DEAD/DEAH box helicase, putative RNA splicing factor⌘
D. discoideumUniProtKB:Q55CD3 · dictyBase:DDB_G0270110 (dhx33)DEAD/DEAH box helicase⌘
D. discoideumUniProtKB:Q55EC3 · dictyBase:DDB_G0269306 (dhx35)DEAD/DEAH box helicase⌘
D. discoideumUniProtKB:Q869Z1 · dictyBase:DDB_G0275313 (dhx9)ATP-dependent RNA helicase, DEAD/DEAH box helicase⌘
D. melanogasterUniProtKB:P24785 · FB:FBgn0002774 (male-lethal · nap[ts] · mls · male-killer · Maleless · MLE · CG11680 · maleless · mak · mle · nap · mll)maleless-no-action potential · no action potential⌘
D. melanogasterFB:FBgn0086895 (CG8241 · pea · Prp22 · peanuts · cg8241) · UniProtKB:A1Z9L3⌘
D. melanogasterUniProtKB:Q7K3M5 · FB:FBgn0033160 (cg11107 · CG11107 · anon-EST:Liang-1.18)clone 1.18⌘
D. melanogasterFB:FBgn0032883 (cg9323 · CG9323 · 38E.15) · UniProtKB:Q8SWT2⌘
D. melanogasterUniProtKB:Q9VIZ3 · FB:FBgn0086444 (l(2)E104 · cg10689 · Cb · l(2)37Cb · CG10689)lethal (2) 37Cb⌘
D. melanogasterFB:FBgn0032194 (CG4901 · cg4901) · UniProtKB:Q9VL25⌘
D. melanogasterFB:FBgn0031631 (cg3225 · CG3225) · UniProtKB:Q9VR29⌘
D. melanogasterFB:FBgn0030833 (cg8915 · helicasa · CG8915) · UniProtKB:Q9VX63⌘
D. melanogasterUniProtKB:Q9VY54 · FB:FBgn0026713 (CG1375 · l(1)G0476 · l(1)G0416 · l(1)G0103 · l(1)G0007 · l(1)G0176 · l(1)G0491 · EP784 · CG32604 · l(1)G0308 · cg1405 · l(1)G0028 · CG1405 · EP764)lethal (1) G0007⌘
D. melanogasterFB:FBgn0030246 (cg1582 · CG1582) · UniProtKB:Q9VZ55⌘
E. coliUniProtKB:P43329 · ECOLI:G6732-MONOMER (b1413 · ECK1406 · hrpA · HrpA)ATP-dependent helicase⌘
E. coliUniProtKB:P37024 · ECOLI:EG12329-MONOMER (HrpB · yadO · hrpB · b0148 · ECK0147)predicted ATP-dependent helicase⌘
G. gallusNCBI:XP_422834 · ENTREZ:425032
G. gallusNCBI:XP_424198 · ENTREZ:426560
G. gallusNCBI:XP_424728 · ENTREZ:427136
G. gallusNCBI:XP_001233396 · ENTREZ:417499
G. gallusNCBI:XP_418105 · ENTREZ:419982
G. gallusNCBI:XP_417352 · ENTREZ:419172
G. gallusNCBI:XP_426893 · ENTREZ:429336
G. gallusNCBI:XP_413970 · ENTREZ:415602
G. gallusNCBI:XP_423195 · ENTREZ:425433
G. gallusUniProtKB:Q5F3A9 (RCJMB04_24b10 · IPI00577528 · Q5F3A9) · ENTREZ:422813⌘
G. gallusUniProtKB:Q5ZLE8 (IPI00591998 · RCJMB04_6i5 · Q5ZLE8) · ENTREZ:415875⌘
H. sapiensENSEMBL:ENSG00000109606 · UniProtKB:O43143 (DBP1 · IPI00396435 · DHX15_HUMAN · DDX15 · DHX15 · O43143)Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15⌘
H. sapiensENSEMBL:ENSG00000204560 · UniProtKB:O60231 (DDX16 · DBP2 · O60231 · DHX16_HUMAN · DHX16 · KIAA0577 · IPI00552073)Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16⌘
H. sapiensENSEMBL:ENSG00000206397 · UniProtKB:O60231 (DDX16 · DBP2 · O60231 · DHX16_HUMAN · DHX16 · KIAA0577 · IPI00552073)Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16⌘
H. sapiensENSEMBL:ENSG00000067248 · UniProtKB:Q7Z478 (DHX29 · IPI00217413 · DDX29 · DHX29_HUMAN · Q7Z478)ATP-dependent RNA helicase DHX29⌘
H. sapiensENSEMBL:ENSG00000005100 · UniProtKB:Q9H6R0 (DHX33_HUMAN · IPI00655950 · DHX33 · Q9H6R0 · IPI00302860 · DDX33)Putative ATP-dependent RNA helicase DHX33⌘
H. sapiensENSEMBL:ENSG00000101452 · UniProtKB:Q9H5Z1 (DDX35 · Q9H5Z1 · IPI00030288 · C20orf15 · DHX35 · DHX35_HUMAN)Probable ATP-dependent RNA helicase DHX35⌘
H. sapiensENSEMBL:ENSG00000174953 · UniProtKB:Q9H2U1 (Q9H2U1 · DHX36_HUMAN · MLEL1 · IPI00784170 · IPI00217760 · IPI00027415 · DDX36 · DHX36 · KIAA1488 · RHAU)Probable ATP-dependent RNA helicase DHX36⌘
H. sapiensENSEMBL:ENSG00000163214 · UniProtKB:Q6P158 (IPI00749029 · Q6P158 · IPI00399364 · DHX57_HUMAN · DHX57 · IPI00168885)Putative ATP-dependent RNA helicase DHX57⌘
H. sapiensENSEMBL:ENSG00000067596 · UniProtKB:Q14562 (IPI00031508 · Q14562 · DDX8 · DHX8_HUMAN · DHX8)ATP-dependent RNA helicase DHX8⌘
H. sapiensENSEMBL:ENSG00000135829 · UniProtKB:Q08211 (IPI00844578 · Q08211 · DHX9_HUMAN · LKP · DDX9 · NDH2 · DHX9)ATP-dependent RNA helicase A⌘
H. sapiensENSEMBL:ENSG00000140829 · UniProtKB:Q92620 (Q92620 · DDX38 · IPI00294211 · KIAA0224 · PRP16 · DHX38 · PRP16_HUMAN)Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16⌘
M. musculusNCBI:NP_081263 · MGI:MGI:1916442 (Ddx16 · Dhx16 · DBP2)DEAH (Asp-Glu-Ala-His) box polypeptide 16⌘
M. musculusNCBI:NP_665685 · MGI:MGI:1918965 (Ddx35 · Dhx35)DEAH (Asp-Glu-Ala-His) box polypeptide 35⌘
M. musculusNCBI:NP_848467 · MGI:MGI:1927617 (Prp16 · Ddx38 · Dhx38)DEAH (Asp-Glu-Ala-His) box polypeptide 38⌘
M. musculusUniProtKB:O35286 · MGI:MGI:1099786 (DBP1 · Ddx15 · mDEAH9 · Dhx15 · HRH2)DEAH (Asp-Glu-Ala-His) box polypeptide 15⌘
M. musculusUniProtKB:Q6PGC1 · MGI:MGI:2145374 (Dhx29)DEAH (Asp-Glu-Ala-His) box polypeptide 29⌘
M. musculusUniProtKB:Q80VY9 · MGI:MGI:2445102 (Ddx33 · Dhx33)DEAH (Asp-Glu-Ala-His) box polypeptide 33⌘
M. musculusUniProtKB:Q8VHK9 · MGI:MGI:1919412 (Dhx36 · Ddx36)DEAH (Asp-Glu-Ala-His) box polypeptide 36⌘
M. musculusUniProtKB:Q6P5D3 · MGI:MGI:2147067 (Dhx57)DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57⌘
M. musculusUniProtKB:A2A4P0 · MGI:MGI:1306823 (Dhx8 · Ddx8 · mDEAH6)RNA helicase · DEAH (Asp-Glu-Ala-His) box polypeptide 8⌘
M. musculusUniProtKB:O70133 · MGI:MGI:108177 (RHA · leukophysin · NDHII · Ddx9 · Dhx9)NDH II · RNA helicase · nuclear DNA helicase II · DEAH (Asp-Glu-Ala-His) box polypeptide 9⌘
M. musculusUniProtKB:B2RR83 · MGI:MGI:2448561 (Ythdc2)YTH domain containing 2⌘
R. norvegicusNCBI:XP_227203 · RGD:1308767 (Dhx36)DEAH (Asp-Glu-Ala-His) box polypeptide 36⌘
R. norvegicusNCBI:XP_342566 · RGD:1311165
R. norvegicusNCBI:XP_001066523 · RGD:1308548 (Dhx9)DEAH (Asp-Glu-Ala-His) box polypeptide 9⌘
R. norvegicusNCBI:XP_215481 · RGD:1308724
R. norvegicusNCBI:XP_214053 · RGD:1308072 (Dhx15)DEAH (Asp-Glu-Ala-His) box polypeptide 15⌘
R. norvegicusNCBI:XP_238048 · RGD:1310345 (Dhx38)DEAH (Asp-Glu-Ala-His) box polypeptide 38⌘
R. norvegicusUniProtKB:Q6MG13 · RGD:1302963 (Dhx16)DEAH (Asp-Glu-Ala-His) box polypeptide 16⌘
R. norvegicusUniProtKB:Q6TXG4 · RGD:1310723 (Dhx8)DEAH (Asp-Glu-Ala-His) box polypeptide 8⌘
R. norvegicusNCBI:XP_213370 · RGD:1307239
S. cerevisiaeUniProtKB:P36009 · SGD:S000001561 (DHR2 · YKL078W)Predominantly nucleolar DEAH-box ATP-dependent RNA helicase, required for 18S rRNA synthesis⌘
S. cerevisiaeUniProtKB:P15938 · SGD:S000001794 (PRP16 · YKR086W)RNA helicase in the DEAH-box family involved in the second catalytic step of splicing, exhibits ATP-dependent RNA unwinding activity⌘
S. cerevisiaeUniProtKB:P24384 · SGD:S000000815 (PRP22 · YER013W)DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase, associates with lariat intermediates before the second catalytic step of splicing⌘
S. cerevisiaeUniProtKB:P20095 · SGD:S000005294 (YNR011C · PRP2 · RNA2)RNA-dependent ATPase in the DEAH-box family, required for activation of the spliceosome before the first transesterification step in RNA splicing⌘
S. cerevisiaeUniProtKB:P53131 · SGD:S000003088 (YGL120C · JA1 · PRP43)RNA helicase in the DEAH-box family, functions in both RNA polymerase I and polymerase II transcript metabolism, involved in release of the lariat-intron from the spliceosome⌘
S. cerevisiaeUniProtKB:Q06698 · SGD:S000004411 (YLR419W)Putative helicase with limited sequence similarity to human Rb protein⌘
S. pombeUniProtKB:Q10752 · GeneDB_Spombe:SPBC19C2.01 (SPBC19C2.01 · cdc28 · prp8)ATP-dependent RNA helicase Cdc28⌘
S. pombeUniProtKB:O42945 · GeneDB_Spombe:SPBC16H5.10c (SPBC16H5.10c · prp43)ATP-dependent RNA helicase Prp43⌘
S. pombeUniProtKB:Q03319 · GeneDB_Spombe:SPAC2G11.11c (SPAC2G11.11c · prh1)ATP-dependent RNA helicase Prh1⌘
S. pombeUniProtKB:Q9P774 · GeneDB_Spombe:SPBC1711.17 (SPBC17G9.01 · SPBC1711.17 · prp16)ATP-dependent RNA helicase Prp16⌘
S. pombeUniProtKB:O42643 · GeneDB_Spombe:SPAC10F6.02c (prp22 · SPAC10F6.02c)ATP-dependent RNA helicase Prp22⌘
S. pombeUniProtKB:O94536 · GeneDB_Spombe:SPCC895.09c (SPCC895.09c · ucp12)ATP-dependent RNA helicase Ucp1 · ATP-dependent RNA helicase Ucp1 (predicted)⌘
S. pombeUniProtKB:O60114 · GeneDB_Spombe:SPBC15C4.05 (SPBC15C4.05)ATP-dependent RNA/DNA helicase · ATP-dependent RNA/DNA helicase (predicted)⌘
ProteinPublicationCurator Notes
UniProtKB:P24384 · SGD:S000000815PMID:7935475 Ono Y, et al. Identification of a putative RNA helicase (HRH1), a human homolog of yeast Prp22. Mol Cell Biol. 1994 Nov;14(11):7611-20.The H. sapiens protein Q14562 complements a homologous mutation in S. cerevisiae. This paper shows partial complementation of a yeast prp22 temperature-sensitive mutant by expression of human HRH1/DHX8 (Q14562). The results strongly suggest that HRH1 is a functional human homolog of the yeast Prp22 protein.
DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
SGD Disease Papers (1)
UniProtKB:Q06698 · SGD:S000004411PMID:16181730 Takemura M (2005) Evolutionary history of the retinoblastoma gene from archaea to eukarya. Biosystems 82(3):266-72
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu