P-POD: Princeton Protein Orthology Database: GO3/Para3698

This family has 17 members: 3 Arabidopsis thaliana, 1 Caenorhabditis elegans, 2 Danio rerio, 1 Drosophila melanogaster, 2 Gallus gallus, 2 Homo sapiens, 2 Mus musculus, 2 Rattus norvegicus, 1 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

17 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2091990 (AT3G26990 · MOJ10.6) · NCBI:NP_189335.2⌘
A. thalianaNCBI:NP_569007.1 · TAIR:locus:2171795 (AT5G65180 · MQN23_12 · MQN23.12)⌘
A. thalianaNCBI:NP_196568.2 · TAIR:locus:2184113 (AT5G10060 · T31P16.50 · T31P16_50)⌘
C. elegansWB:WBGene00015347 (C02F5.4 · cids-1) · UniProtKB:P34281⌘
D. rerioENSEMBL:ENSDARP00000080391
D. rerioZFIN:ZDB-GENE-030131-355 · UniProtKB:Q7ZUK9
D. melanogasterFB:FBgn0035318 · UniProtKB:Q9W039
G. gallusUniProtKB:Q5ZM30 · ENTREZ:420953
G. gallusUniProtKB:Q5F4B4 · ENTREZ:419295
H. sapiensENSEMBL:ENSG00000141425 · UniProtKB:Q96P16
H. sapiensENSEMBL:ENSG00000101413 · UniProtKB:Q9NQG5
M. musculusMGI:MGI:2385066 · UniProtKB:Q8VDS4
M. musculusUniProtKB:Q9CSU0 · MGI:MGI:1917720 (Rprd1b)regulation of nuclear pre-mRNA domain containing 1B⌘
R. norvegicusNCBI:NP_001092197 · RGD:1304782
R. norvegicusRGD:1307374 · NCBI:XP_001056597
S. cerevisiaeUniProtKB:Q05543 · SGD:S000002697 (YDR289C · RTT103)Protein that interacts with exonuclease Rat1p and Rai1p and plays a role in transcription termination by RNA polymerase II, has an RPR domain (carboxy-terminal domain interacting domain)⌘
S. pombeUniProtKB:O74814 · GeneDB_Spombe:SPBC337.03 (SPBC337.03)DUF618 family protein, involved in transcription · DUF618 family protein, involved in transcription (predicted)⌘

No functional conservation results.

Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu