P-POD: Princeton Protein Orthology Database: GO3/Para12

This family has 22 members: 3 Arabidopsis thaliana, 2 Caenorhabditis elegans, 2 Danio rerio, 1 Dictyostelium discoideum, 2 Drosophila melanogaster, 1 Gallus gallus, 2 Homo sapiens, 2 Mus musculus, 2 Rattus norvegicus, 3 Saccharomyces cerevisiae, 2 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Para12
22 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_173218.2 · TAIR:locus:2007973 (ATCSTF77 · AT1G17760 · F11A6_10 · F11A6.10 · CSTF77)ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77⌘
A. thalianaNCBI:NP_563700.1 · TAIR:locus:2020265 (F20D22.14 · PRP39 · AT1G04080)⌘
A. thalianaNCBI:NP_199452.2 · TAIR:locus:2170453
C. elegansWB:WBGene00006307 (suf-1 · F28C6.6) · UniProtKB:Q19866⌘
C. elegansWB:WBGene00017768 (F25B4.5) · UniProtKB:Q22961⌘
D. rerioUniProtKB:Q1JPZ7 · ZFIN:ZDB-GENE-030616-420 (prpf39)PRP39 pre-mRNA processing factor 39 homolog (yeast)⌘
D. rerioUniProtKB:Q7ZVG5 · ZFIN:ZDB-GENE-040426-1997 (cstf3)cleavage stimulation factor, 3' pre-RNA, subunit 3⌘
D. discoideumUniProtKB:Q54R91 · dictyBase:DDB_G0283307 (prpf39)tetratricopeptide-like helical domain-containing protein (TPR), putative U1 small nuclear ribonucleoparticle-associated protein, pre-mRNA processing factor 39⌘
D. melanogasterUniProtKB:P25991 · FB:FBgn0003559 (l(1)EC235 · CstF-77 · l(1)3DES · CstF77 · CG17170 · l(1)X3 · 3-DES · R-9-18 · su(f) · l3DES · l(1)X1 · su[+]-f · l(1)su(f) · SU-f · 29 · su-f · 28 · l(1)G0393 · 3DES · lethal3Des · l(1)R-9-18 · EC235 · Su(f) · 19 · l(1)20Eb · R9-18)section 29 · section 19 · suppressor of forked · section 28⌘
D. melanogasterFB:FBgn0039600 (Prp39 · CG1646) · UniProtKB:Q7KRW8⌘
G. gallusUniProtKB:Q5F4A0 (IPI00592390 · Q5F4A0 · RCJMB04_1m7) · ENTREZ:421595⌘
H. sapiensENSEMBL:ENSG00000176102 · UniProtKB:Q12996 (CSTF3 · CSTF3_HUMAN · IPI00015195 · Q12996)Cleavage stimulation factor 77 kDa subunit⌘
H. sapiensENSEMBL:ENSG00000185246 · UniProtKB:Q86UA1 (IPI00789246 · PRPF39 · IPI00878754 · Q86UA1 · PRP39_HUMAN)Pre-mRNA-processing factor 39⌘
M. musculusUniProtKB:Q99LI7 · MGI:MGI:1351825 (Cstf3)cleavage stimulation factor, 3' pre-RNA, subunit 3⌘
M. musculusUniProtKB:Q8K2Z2 · MGI:MGI:104602 (Prpf39 · Srcs1)PRP39 pre-mRNA processing factor 39 homolog (yeast)⌘
R. norvegicusNCBI:XP_001076405 · RGD:1308702 (Prpf39)PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)⌘
R. norvegicusUniProtKB:A0JPN7 · RGD:1305901 (Cstf3)cleavage stimulation factor, 3' pre-RNA, subunit 3⌘
S. cerevisiaeUniProtKB:P39682 · SGD:S000004509 (PRP39 · YML046W)U1 snRNP protein involved in splicing, contains multiple tetriatricopeptide repeats⌘
S. cerevisiaeUniProtKB:Q03776 · SGD:S000002643 (SNU65 · PRP42 · MUD16 · YDR235W)U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis⌘
S. cerevisiaeUniProtKB:P25298 · SGD:S000004665 (RNA14 · YMR061W)Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends⌘
S. pombeUniProtKB:O74970 · GeneDB_Spombe:SPBC4B4.09 (SPBC4B4.09 · usp105 · prp39)U1 snRNP-associated protein Usp105⌘
S. pombeUniProtKB:O14233 · GeneDB_Spombe:SPAC6F12.17 (SPAC6F12.17 · rna14)mRNA cleavage and polyadenylation specificity factor complex subunit Rna14⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu