P-POD: Princeton Protein Orthology Database: GO3/OrthoMCL688

This family has 20 members: 3 Arabidopsis thaliana, 1 Caenorhabditis elegans, 2 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 1 Homo sapiens, 1 Mus musculus, 6 Rattus norvegicus, 2 Saccharomyces cerevisiae, 2 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

20 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_200478.1 · TAIR:locus:2164986 (MIK19.12 · AT5G56670)⌘
A. thalianaNCBI:NP_565458.1 · TAIR:locus:2051985 (AT2G19750 · F6F22_22 · F6F22.22)⌘
A. thalianaNCBI:NP_194668.1 · TAIR:locus:2118244 (F17A13_210 · AT4G29390 · F17A13.210)⌘
C. elegansWB:WBGene00004499 (C26F1.4 · rps-30) · UniProtKB:Q18231⌘
D. rerioZFIN:ZDB-GENE-050417-416 (zgc:110695) · UniProtKB:Q567X2⌘
D. rerioUniProtKB:Q6PC01 · ZFIN:ZDB-GENE-040426-1700 (fau)Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30⌘
D. discoideumUniProtKB:Q556Y1 · dictyBase:DDB_G0273191 (rps30 · rps30-1)40S ribosomal protein S30⌘
D. melanogasterUniProtKB:Q7JYY0 · FB:FBgn0038834 (RpS30 · anon-EST:Posey127 · S30 · CG15697)Ribosomal protein S30⌘
H. sapiensENSEMBL:ENSG00000149806 · UniProtKB:P35544 (P35544 · FAU · UBIM_HUMAN · IPI00019770)Ubiquitin-like protein FUBI⌘
M. musculusUniProtKB:P35545 · MGI:MGI:102547 (Fau · MNSFbeta)monoclonal nonspecific suppressor factor betamonoclonal nonspecific suppressor factor beta · Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)⌘
R. norvegicusNCBI:XP_001075341 · RGD:1585365 (LOC687439)similar to Finkel-Biskis-Reilly murine sarcoma virusubiquitously expressed⌘
R. norvegicusNCBI:XP_001065806 · RGD:1589242
R. norvegicusNCBI:XP_001075155 · RGD:1594990 (LOC686658)similar to Finkel-Biskis-Reilly murine sarcoma virusubiquitously expressed⌘
R. norvegicusNCBI:XP_001080119 · RGD:1597505
R. norvegicusNCBI:XP_001080915 · RGD:1565317 (RGD1565317)similar to ubiquitin-like/S30 ribosomal fusion protein⌘
R. norvegicusNCBI:XP_001058530 · RGD:1583500 (LOC681191)similar to Finkel-Biskis-Reilly murine sarcoma virusubiquitously expressed⌘
S. cerevisiaeUniProtKB:Q12087 · SGD:S000004278 (YLR287C-A · RPS30A)Protein component of the small (40S) ribosomal subunit⌘
S. cerevisiaeUniProtKB:Q12087 · SGD:S000005708 (YOR182C · RPS30B)Protein component of the small (40S) ribosomal subunit⌘
S. pombeUniProtKB:O42952 · GeneDB_Spombe:SPBC19G7.03c (SPBC19G7.03c · rps30-2 · rps30 · rps3002)40S ribosomal protein S30⌘
S. pombeUniProtKB:O42952 · GeneDB_Spombe:SPAC19B12.04 (rps3001 · SPAC19B12.04 · rps30-1)40S ribosomal protein S30⌘

No functional conservation results.

Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu