P-POD: Princeton Protein Orthology Database: GO3/OrthoMCL516

This family has 23 members: 2 Arabidopsis thaliana, 2 Caenorhabditis elegans, 3 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 2 Gallus gallus, 3 Homo sapiens, 3 Mus musculus, 3 Rattus norvegicus, 2 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/OrthoMCL516
23 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2078713 (F1C9.33 · AT3G01890 · F1C9_33) · NCBI:NP_566154.2⌘
A. thalianaNCBI:NP_196921.1 · TAIR:locus:2174638 (MUA22.17 · MUA22_17 · CHC1 · AT5G14170)⌘
C. elegansWB:WBGene00015971 (C18E3.2) · UniProtKB:O02101⌘
C. elegansWB:WBGene00044072 (ZK1128.5 · tag-246) · UniProtKB:Q09646⌘
D. rerioENSEMBL:ENSDARP00000015411
D. rerioENSEMBL:ENSDARP00000056640
D. rerioZFIN:ZDB-GENE-030131-1835 · UniProtKB:Q802C8
D. discoideumUniProtKB:Q556Z0 · dictyBase:DDB_G0273203 (snf12 · snf12-1)CHC group protein, SWIB/MDM2 domain-containing protein⌘
D. melanogasterUniProtKB:Q9VYG2 · FB:FBgn0025463 (BAPp60 · i127 · Bap60 · i133 · BAP60 · CG4303)Brahma associated protein 60kD · brahma associated protein 60 kDa · BRM-associated protein 60⌘
G. gallusNCBI:XP_425835 · ENTREZ:428275
G. gallusNCBI:XP_427895 · ENTREZ:430336
H. sapiensENSEMBL:ENSG00000066117 · UniProtKB:Q96GM5 (IPI00852816 · SMARCD1 · Q96GM5 · SMRD1_HUMAN · IPI00853408 · BAF60A)SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1⌘
H. sapiensENSEMBL:ENSG00000108604 · UniProtKB:Q92925 (IPI00514042 · SMRD2_HUMAN · IPI00853043 · BAF60B · SMARCD2 · Q92925 · PRO2451)SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2⌘
H. sapiensENSEMBL:ENSG00000082014 · UniProtKB:Q6STE5 (Q6STE5 · IPI00106988 · SMARCD3 · IPI00456146 · BAF60C · SMRD3_HUMAN)SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3⌘
M. musculusUniProtKB:Q61466 · MGI:MGI:1933623 (D15Kz1 · Smarcd1 · Baf60a)SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1⌘
M. musculusUniProtKB:Q99JR8 · MGI:MGI:1933621 (Smarcd2 · Baf60b)SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2⌘
M. musculusUniProtKB:Q6P9Z1 · MGI:MGI:1914243 (BAF60C · Smarcd3)SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3⌘
R. norvegicusNCBI:XP_001063058 · RGD:1305406 (Smarcd1)SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1⌘
R. norvegicusRGD:69289 (Smarcd2) · UniProtKB:O54772 (Smarcd2 · IPI00515804 · O54772 · Baf60b · SMRD2_RAT · IPI00198069)SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 · SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2⌘⌘
R. norvegicusUniProtKB:Q5U3Y2 · RGD:1311869 (Smarcd3)SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3⌘
S. cerevisiaeUniProtKB:P25632 · SGD:S000000648 (RSC6 · YCR052W)Component of the RSC chromatin remodeling complex⌘
S. cerevisiaeUniProtKB:P53628 · SGD:S000005306 (YNR023W · SNF12 · SWP73)73 kDa subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation⌘
S. pombeUniProtKB:Q9P7S3 · GeneDB_Spombe:SPAC23G3.10c (ssr3 · SPAC23G3.10c)SWI/SNF and RSC complex subunit Ssr3⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu