P-POD: Princeton Protein Orthology Database: GO3/OrthoMCL2147

This family has 12 members: 2 Arabidopsis thaliana, 1 Caenorhabditis elegans, 1 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 1 Gallus gallus, 1 Homo sapiens, 1 Mus musculus, 1 Rattus norvegicus, 1 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

12 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_176393.1 · TAIR:locus:2036823 (F8K4_21 · F8K4.21 · AT1G62020)⌘
A. thalianaNCBI:NP_179734.1 · TAIR:locus:2050064 (AT2G21390 · F3K23_15 · F3K23.15)⌘
C. elegansWB:WBGene00022119 (Y71F9AL.17) · UniProtKB:Q9N4H7 (Y71F9AL.17)Putative uncharacterized protein⌘⌘
D. rerioUniProtKB:Q6JWU9 · ZFIN:ZDB-GENE-020905-2 (copa)coatomer protein complex, subunit alpha⌘
D. discoideumUniProtKB:Q55FR9 · dictyBase:DDB_G0267982 (alpha-COP · copA)coatomer protein complex alpha subunit, WD40 repeat-containing protein⌘
D. melanogasterUniProtKB:Q9W0B8 · FB:FBgn0025725 (alphaCop · alpha-COP · CG7961 · alphaCOP)alpha-coatomer protein⌘
G. gallusENTREZ:426906 · UniProtKB:Q5F354 (Q5F354 · IPI00577325 · RCJMB04_34d13)⌘
H. sapiensENSEMBL:ENSG00000122218 · UniProtKB:P53621 (COPA_HUMAN · IPI00646493 · P53621 · COPA · IPI00295857)Coatomer subunit alpha⌘
M. musculusUniProtKB:Q8CIE6 · MGI:MGI:1334462 (xenin · Copa)coatomer protein complex subunit alpha⌘
R. norvegicusUniProtKB:Q5BJV4 · RGD:1310525 (Copa)coatomer protein complex subunit alpha⌘
S. cerevisiaeUniProtKB:P53622 · SGD:S000002304 (SOO1 · SEC33 · COP1 · YDL145C · RET1)Alpha subunit of COPI vesicle coatomer complex, which surrounds transport vesicles in the early secretory pathway⌘
S. pombeUniProtKB:Q96WV5 · GeneDB_Spombe:SPBPJ4664.04 (SPBPJ4664.04)coatomer alpha subunit · coatomer alpha subunit (predicted)⌘

No functional conservation results.

Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu