P-POD: Princeton Protein Orthology Database: GO3/OrthoMCL2127

This family has 12 members: 2 Arabidopsis thaliana, 1 Caenorhabditis elegans, 1 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 1 Gallus gallus, 1 Homo sapiens, 1 Mus musculus, 1 Rattus norvegicus, 1 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

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12 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2087755 (MBK21.1 · AT3G12860) · NCBI:NP_187892.2⌘
A. thalianaNCBI:NP_176007.1 · TAIR:locus:2205270 (T6H22_10 · AT1G56110 · T6H22.10 · NOP56)NOP56-LIKE PROTEIN · Arabidopsis homolog of nucleolar protein Nop56⌘
C. elegansWB:WBGene00010627 (K07C5.4) · UniProtKB:Q21276⌘
D. rerioZFIN:ZDB-GENE-040109-1 · UniProtKB:Q6DRE5
D. discoideumUniProtKB:Q54MT2 · dictyBase:DDB_G0285679 (nol5a)NOP5 family protein⌘
D. melanogasterFB:FBgn0038964 (CG13849 · FBgn0038964 · Nop56) · UniProtKB:Q95WY3⌘
G. gallusUniProtKB:Q5ZMD0 · ENTREZ:426574
H. sapiensENSEMBL:ENSG00000101361 · UniProtKB:O00567 (IPI00411937 · O00567 · NOL5A_HUMAN · NOP56 · NOL5A)Nucleolar protein 5A⌘
M. musculusUniProtKB:Q9D6Z1 · MGI:MGI:1914384 (Nol5a · NOP56 · Nop56)NOP56 ribonucleoprotein homolog (yeast) · 56kDa with KKE/D repeat⌘
R. norvegicusRGD:1308892 · UniProtKB:Q4KLK7
S. cerevisiaeUniProtKB:Q12460 · SGD:S000004187 (SIK1 · NOP56 · YLR197W)Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation⌘
S. pombeUniProtKB:O94514 · GeneDB_Spombe:SPBC646.10c (SPBC646.10c)U3 snoRNP protein Nop56 · U3 snoRNP protein Nop56 (predicted)⌘

No functional conservation results.

Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu