P-POD: Princeton Protein Orthology Database: GO3/OrthoMCL1844

This family has 13 members: 2 Arabidopsis thaliana, 1 Caenorhabditis elegans, 1 Danio rerio, 1 Dictyostelium discoideum, 2 Drosophila melanogaster, 1 Gallus gallus, 1 Homo sapiens, 1 Mus musculus, 1 Rattus norvegicus, 1 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

13 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2050286 (AT2G25610 · F3N11_6 · F3N11.6) · NCBI:NP_180132.1⌘
A. thalianaNCBI:NP_001119099.1 · TAIR:locus:2131337 (L23H3.10 · AT4G32530 · L23H3_10)⌘
C. elegansWB:WBGene00006913 (vha-4 · T01H3.1) · UniProtKB:Q22087⌘
D. rerioUniProtKB:Q6PD81 · ZFIN:ZDB-GENE-030131-443 (atp6v0b)ATPase, H+ transporting, V0 subunit B⌘
D. discoideumUniProtKB:Q86AS7 · dictyBase:DDB_G0274141 (DDB_G0274141)Vacuolar ATP synthase 21 kDa proteolipid subunit⌘
D. melanogasterFB:FBgn0028662 (V-ATPase · CG7007 · vhaPPA1-1 · VhaPPA1-1) · UniProtKB:Q9VFE3⌘
D. melanogasterFB:FBgn0038276 (CG7026) · UniProtKB:Q9VFE5⌘
G. gallusNCBI:XP_422414 · ENTREZ:424575
H. sapiensENSEMBL:ENSG00000117410 · UniProtKB:Q99437 (VATO_HUMAN · Q99437 · IPI00015261 · ATP6V0B · ATP6F)V-type proton ATPase 21 kDa proteolipid subunit⌘
M. musculusUniProtKB:Q91V37 · MGI:MGI:1890510 (VMA16 · Atp6f · Atp6v0b)ATPase, H+ transporting, lysosomal V0 subunit B⌘
R. norvegicusNCBI:XP_216510 · RGD:1308303 (Atp6v0b)ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b⌘
S. cerevisiaeUniProtKB:P23968 · SGD:S000001068 (VMA16 · PPA1 · YHR026W)Subunit c'' of the vacuolar ATPase, which functions in acidification of the vacuole⌘
S. pombeUniProtKB:O14046 · GeneDB_Spombe:SPAC2C4.13 (SPAC2C4.13 · vma16)V-type ATPase subunit c''⌘
ProteinPublicationCurator Notes
UniProtKB:P23968 · SGD:S000001068PMID:15958496 Tyagi W, et al. Cloning and regulation of a stress-regulated Pennisetum glaucum vacuolar ATPase c gene and characterization of its promoter that is expressed in shoot hairs and floral organs. Plant Cell Physiol. 2005 Aug;46(8):1411-22.The P. glaucum protein PgVHA-c1 does not complement a homologous mutation in S. cerevisiae.
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
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