P-POD: Princeton Protein Orthology Database: GO3/OrthoMCL1411

This family has 15 members: 1 Arabidopsis thaliana, 2 Caenorhabditis elegans, 1 Danio rerio, 2 Drosophila melanogaster, 1 Escherichia coli, 1 Gallus gallus, 1 Homo sapiens, 1 Mus musculus, 1 Rattus norvegicus, 3 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/OrthoMCL1411
15 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_200010.1 · TAIR:locus:2173093
C. elegansWB:WBGene00011003 (R04B5.5) · UniProtKB:Q21702⌘
C. elegansWB:WBGene00011004 (R04B5.6) · UniProtKB:Q21703⌘
D. rerioENSEMBL:ENSDARP00000069904
D. melanogasterUniProtKB:O96299 · FB:FBgn0022359 (Sdh-2 · CG4649 · Sodh-2 · SODH-2 · DM_7299382 · Sdh)Sorbitol dehydrogenase-2⌘
D. melanogasterUniProtKB:O97479 · FB:FBgn0024289 (DM_7298873 · Sodh-1 · CG1982 · Sodh · BG:DS00464.2 · Sdh-1)Sorbitol dehydrogenase 1 · Sorbitol dehydrogenase like⌘
E. coliUniProtKB:P77280 · ECOLI:G6961-MONOMER (ydjJ · YdjJ · ECK1772 · b1774)predicted oxidoreductase, Zn-dependent and NAD(P)-binding⌘
G. gallusNCBI:XP_413719 · ENTREZ:415332
H. sapiensENSEMBL:ENSG00000140263 · UniProtKB:Q00796 (SORD · DHSO_HUMAN · IPI00216057 · Q00796)Sorbitol dehydrogenase⌘
M. musculusUniProtKB:Q64442 · MGI:MGI:98266 (Sord · Sodh-1 · Sdh1 · Sdh-1)sorbitol dehydrogenase⌘
R. norvegicusUniProtKB:P27867 · RGD:3734 (Sord)sorbitol dehydrogenase⌘
S. cerevisiaeUniProtKB:P35497 · SGD:S000003920 (SDH1 · SOR1 · YJR159W)Sorbitol dehydrogenase⌘
S. cerevisiaeUniProtKB:Q07786 · SGD:S000002405 (SOR2 · YDL246C)Protein of unknown function⌘
S. cerevisiaeUniProtKB:Q07993 · SGD:S000004060 (XYL2 · YLR070C)Xylitol dehydrogenase, converts xylitol to D-xylulose⌘
S. pombeUniProtKB:P36624 · GeneDB_Spombe:SPBC1773.05c (SPBC1773.05c · tms1)hexitol dehydrogenase⌘
ProteinPublicationCurator Notes
UniProtKB:Q07993 · SGD:S000004060PMID:15184173 Toivari MH, et al. Endogenous xylose pathway in Saccharomyces cerevisiae. Appl Environ Microbiol. 2004 Jun;70(6):3681-6.The P. stipitis protein XDH was expressed in S. cerevisiae, but complementation was not directly tested. The authors expressed genes from P. stipitis in wild type S. cerevisiae and were not testing for complementation.
UniProtKB:Q07993 · SGD:S000004060PMID:15184173 Toivari MH, et al. Endogenous xylose pathway in Saccharomyces cerevisiae. Appl Environ Microbiol. 2004 Jun;70(6):3681-6.The P. stipitis protein XR was expressed in S. cerevisiae, but complementation was not directly tested. The authors expressed genes from P. stipitis in wild type S. cerevisiae and were not testing for complementation.
DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu