P-POD: Princeton Protein Orthology Database: GO3/OrthoMCL1376

This family has 15 members: 2 Arabidopsis thaliana, 2 Caenorhabditis elegans, 1 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 1 Gallus gallus, 2 Homo sapiens, 1 Mus musculus, 1 Rattus norvegicus, 2 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

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GO3/OrthoMCL1376
15 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_566969.1 · TAIR:locus:2079924 (ERD16 · UBQ1 · F3C22.8 · HAP4 · AT3G52590 · EMB2167)EMBRYO DEFECTIVE 2167 · UBIQUITIN EXTENSION PROTEIN 1 · HAPLESS 4 · EARLY-RESPONSIVE TO DEHYDRATION 16⌘
A. thalianaNCBI:NP_565836.1 · TAIR:locus:2053496 (AT2G36170 · F9C22_10 · F9C22.10)⌘
C. elegansWB:WBGene00006727 (ubq-1 · F25B5.4) · UniProtKB:P14792 (ubq-2 · ubib · UBIQ_CAEEL · ubq-1 · F25B5.4 · ubia · ZK1010.1 · Ubiquitin)⌘⌘
C. elegansUniProtKB:P14792 (ubq-2 · ubib · UBIQ_CAEEL · ubq-1 · F25B5.4 · ubia · ZK1010.1 · Ubiquitin) · WB:WBGene00006728 (ubq-2 · ZK1010.1)⌘⌘
D. rerioUniProtKB:Q3B7P7 · ZFIN:ZDB-GENE-051023-7 (uba52)ubiquitin A-52 residue ribosomal protein fusion product 1⌘
D. discoideumNCBI:EAL67035.1 · dictyBase:DDB_G0280755 (ubqB · rpl40)ubiquitin/ribosomal protein L40 fusion protein⌘
D. melanogasterFB:FBgn0003943 (DmUb · ubi63E · Ubp · Ubi-p · polyubiquitin · Ubi-p63E · ubiquitin · Ubiquitin-polymeric · Ubiquitin · Ubiquitin-63E · Ub · Ubiq · CG11624 · Ubip · Ubi63E · Ubi63p) · UniProtKB:P68198⌘
G. gallusUniProtKB:O42388 (O42388 · IPI00589085) · ENTREZ:395958⌘
H. sapiensENSEMBL:ENSG00000150991 · UniProtKB:P62988 (UBCEP1 · UBA80 · UBA52 · UBIQ_HUMAN · UBC · Ubiquitin · UBB · P62988 · IPI00798155 · UBCEP2 · RPS27A)⌘
H. sapiensENSEMBL:ENSG00000170315 · UniProtKB:P62988 (UBCEP1 · UBA80 · UBA52 · UBIQ_HUMAN · UBC · Ubiquitin · UBB · P62988 · IPI00798155 · UBCEP2 · RPS27A)⌘
M. musculusNCBI:NP_001098627 · MGI:MGI:3649356 (OTTMUSG00000004411)predicted gene, OTTMUSG00000004411⌘
R. norvegicusUniProtKB:Q63654 · RGD:621562 (Ubb)ubiquitin B⌘
S. cerevisiaeUniProtKB:P61864 · SGD:S000001802 (UB12 · RPL40B · UBI2 · CEP52B · YKR094C)Fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40⌘
S. cerevisiaeUniProtKB:P61864 · SGD:S000001410 (UBI1 · YIL148W · CEP52A · RPL40A · UB11)Fusion protein, identical to Rpl40Bp, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40⌘
S. pombeGeneDB_Spombe:SPBC337.08c (ubi4 · SPBC337.08c · ubiquitin) · UniProtKB:P0C014⌘
ProteinPublicationCurator Notes
UniProtKB:P61864 · SGD:S000001410PMID:15790562 Shang F, et al. Lys6-modified ubiquitin inhibits ubiquitin-dependent protein degradation. J Biol Chem. 2005 May 27;280(21):20365-74.The S. cerevisiae protein RPL40A was expressed in E. coli, but complementation was not directly tested. This paper describes the biochemical characterization of ubiquitins produced in several expression systems.
UniProtKB:P61864 · SGD:S000001802PMID:15790562 Shang F, et al. Lys6-modified ubiquitin inhibits ubiquitin-dependent protein degradation. J Biol Chem. 2005 May 27;280(21):20365-74.The S. cerevisiae protein RPL40B was expressed in E. coli, but complementation was not directly tested. This paper describes the biochemical characterization of ubiquitins produced in several expression systems.
DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
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