P-POD: Princeton Protein Orthology Database: GO3/Nens3802

This family has 10 members: 1 Arabidopsis thaliana, 1 Caenorhabditis elegans, 1 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 1 Homo sapiens, 1 Mus musculus, 1 Rattus norvegicus, 1 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Nens3802
10 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2075351 (F12M12.180 · AT3G46210) · NCBI:NP_190207.1⌘
C. elegansWB:WBGene00000798 (crn-5 · C14A4.5) · UniProtKB:Q17952⌘
D. rerioUniProtKB:Q1LVM3 · ZFIN:ZDB-GENE-060503-675 (exosc5)exosome component 5⌘
D. discoideumdictyBase:DDB_G0284053 (DDB_G0284053) · UniProtKB:Q54Q83⌘
D. melanogasterUniProtKB:Q95TW1 · FB:FBgn0037815 (dRrp46 · CG4043 · Rrp46)⌘
H. sapiensENSEMBL:ENSG00000077348 · UniProtKB:Q9NQT4 (IPI00015955 · RRP46 · CML28 · EXOSC5 · EXOS5_HUMAN · Q9NQT4)Exosome complex exonuclease RRP46⌘
M. musculusUniProtKB:Q9CRA8 · MGI:MGI:107889 (D7Wsu180e · Exosc5)exosome component 5⌘
R. norvegicusNCBI:XP_218343 · RGD:1307861 (Exosc5)exosome component 5⌘
S. cerevisiaeUniProtKB:P53256 · SGD:S000003327 (RRP46 · YGR095C)Exosome non-catalytic core component⌘
S. pombeUniProtKB:O42894 · GeneDB_Spombe:SPBC115.01c (rrp46 · SPBC115.01c)exosome subunit Rrp46⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
SGD Disease Papers (1)
UniProtKB:P53256 · SGD:S000003327PMID:10465791 Allmang C, et al. (1999) The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases. Genes Dev 13(16):2148-58
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu