P-POD: Princeton Protein Orthology Database: GO3/Nens2823

This family has 12 members: 1 Arabidopsis thaliana, 1 Caenorhabditis elegans, 1 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 1 Gallus gallus, 1 Homo sapiens, 1 Mus musculus, 1 Rattus norvegicus, 1 Saccharomyces cerevisiae, 2 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Nens2823
12 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_197897.3 · TAIR:locus:2179300 (AT5G25150 · TAF5 · F21J6.5)TBP-ASSOCIATED FACTOR 5⌘
C. elegansWB:WBGene00006386 (F30F8.8 · taf-5) · UniProtKB:O01985⌘
D. rerioUniProtKB:Q6NWB7 · ZFIN:ZDB-GENE-051120-180 (taf5)TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor⌘
D. discoideumUniProtKB:Q54KH7 · dictyBase:DDB_G0287337 (taf5)transcription initiation factor TFIID subunit, TFIID subunit⌘
D. melanogasterUniProtKB:P49846 · FB:FBgn0010356 (TAF[[II]]80/85 · p85 · dTAFii80 · CG7704 · Taf80 · TAF[[II]]80 · TAF[II]80 · TAF[[II]]85 · Taf5 · dTAF[[II]]80 · dmTAF5 · dTAF5 · TAF · TAFII80 · TAF80 · Taf85 · dTAFII85 · TAFII85 · dmTaf5 · d80 · TAF80/85 · TAF5 · Taf[[II]]80 · TFIID · TAF[[II]])TBP-associated factor 80 · TBP-associated factor · TBP associated factor 80 · TBP-associated factor 80kD · TFIID 85 · TBP-associated factor 5⌘
G. gallusENTREZ:423872 · UniProtKB:Q5F3I7 (Q5F3I7 · RCJMB04_15p4 · IPI00579493)⌘
H. sapiensENSEMBL:ENSG00000148835 · UniProtKB:Q15542 (TAF5 · IPI00298926 · TAF5_HUMAN · TAF2D · Q15542 · IPI00298925)Transcription initiation factor TFIID subunit 5⌘
M. musculusUniProtKB:Q8C092 · MGI:MGI:2442144 (Taf5)TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor⌘
R. norvegicusNCBI:XP_219965 · RGD:1311332 (Taf5)TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor⌘
S. cerevisiaeUniProtKB:P38129 · SGD:S000000402 (TAF5 · YBR198C · TAF90)Subunit (90 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification⌘
S. pombeUniProtKB:O13282 · GeneDB_Spombe:SPCC5E4.03c (taf5 · SPCC5E4.03c · taf72)SAGA complex subunit/TATA-binding protein associated factor/transcription factor TFIID complex subunit Taf5⌘
S. pombeUniProtKB:O74319 · GeneDB_Spombe:SPBC15D4.14 (taf73 · taf5l · SPBC15D4.14)transcription factor TFIID complex subunit Taf5-like⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu