P-POD: Princeton Protein Orthology Database: GO3/Nens2348

This family has 13 members: 2 Arabidopsis thaliana, 1 Caenorhabditis elegans, 1 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 1 Gallus gallus, 1 Homo sapiens, 1 Mus musculus, 2 Rattus norvegicus, 1 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Nens2348
13 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2091102 (MLP3.4 · AT3G07590) · NCBI:NP_187416.1⌘
A. thalianaNCBI:NP_192193.1 · TAIR:locus:2140240 (T5J8.16 · T5J8_16 · AT4G02840)⌘
C. elegansWB:WBGene00004916 (snr-3 · T28D9.10) · UniProtKB:Q10013⌘
D. rerioUniProtKB:Q8JHH1 · ZFIN:ZDB-GENE-020419-14 (snrpd1)small nuclear ribonucleoprotein D1 polypeptide⌘
D. discoideumUniProtKB:Q54YX5 · dictyBase:DDB_G0278027 (snrpD1)LSM (like-Sm) domain-containing protein, putative small nuclear ribonucleoprotein D1⌘
D. melanogasterUniProtKB:Q9VU02 · FB:FBgn0016940 (snRNP-69D · snRNP · CG10753 · BcDNA:RE39488 · SmD1 · snRNP69D)small nuclear ribonucleoprotein at 69D⌘
G. gallusNCBI:XP_001235936 · ENTREZ:776411
H. sapiensENSEMBL:ENSG00000167088 · UniProtKB:P62314 (IPI00302850 · SNRPD1 · P62314 · SMD1_HUMAN)Small nuclear ribonucleoprotein Sm D1⌘
M. musculusUniProtKB:P62315 · MGI:MGI:98344 (Snrpd1 · SMD1)small nuclear ribonucleoprotein D1⌘
R. norvegicusNCBI:XP_001071688 · RGD:1586777
R. norvegicusNCBI:XP_214621 · RGD:1306345 (Snrpd1)small nuclear ribonucleoprotein D1⌘
S. cerevisiaeUniProtKB:Q02260 · SGD:S000003306 (SPP92 · SMD1 · YGR074W)Core Sm protein Sm D1⌘
S. pombeUniProtKB:O42661 · GeneDB_Spombe:SPAC27D7.07c (SPAC27D7.07c · smd1)Sm snRNP core protein Smd1⌘
ProteinPublicationCurator Notes
UniProtKB:Q02260 · SGD:S000003306PMID:8346029 Rymond BC, et al. Human snRNP polypeptide D1 promotes pre-mRNA splicing in yeast and defines nonessential yeast Smd1p sequences. Nucleic Acids Res. 1993 Jul 25;21(15):3501-5.The H. sapiens protein P62314 complements a homologous mutation in S. cerevisiae.
DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
SGD Disease Papers (1)
UniProtKB:Q02260 · SGD:S000003306PMID:10369684 Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu