P-POD: Princeton Protein Orthology Database: GO3/Nens2248

This family has 13 members: 2 Arabidopsis thaliana, 1 Caenorhabditis elegans, 1 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 1 Gallus gallus, 1 Homo sapiens, 1 Mus musculus, 2 Rattus norvegicus, 1 Saccharomyces cerevisiae, 1 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Nens2248
13 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2030442 (AT1G20580 · F5M15_9 · F5M15.9) · NCBI:NP_564119.1⌘
A. thalianaNCBI:NP_177757.1 · TAIR:locus:2014589 (F15M4.20 · SmD3 · AT1G76300)snRNP core protein SmD3⌘
C. elegansWB:WBGene00004914 (snr-1 · Y116A8C.42) · UniProtKB:Q17348⌘
D. rerioUniProtKB:Q6IQ56 · ZFIN:ZDB-GENE-040625-55 (snrpd3)small nuclear ribonucleoprotein D3 polypeptide⌘
D. discoideumUniProtKB:Q86L45 · dictyBase:DDB_G0273003 (snrpD3)LSM (like-Sm) domain-containing protein, putative small nuclear ribonucleoprotein D3⌘
D. melanogasterUniProtKB:O44437 · FB:FBgn0023167 (guf2 · guf · l(2)131/7 · SYM10 · SmD3 · gutfeeling · l(2)154/1 · CG8427 · l(2)90/37)snRNP Sm D3 · Sm D3 · gut feeling · Small ribonucleoprotein Sm D3⌘
G. gallusUniProtKB:Q5ZL58 (Q5ZL58 · RCJMB04_7j2 · IPI00604392) · ENTREZ:416947⌘
H. sapiensENSEMBL:ENSG00000100028 · UniProtKB:P62318 (IPI00017964 · SNRPD3 · P62318 · SMD3_HUMAN)Small nuclear ribonucleoprotein Sm D3⌘
M. musculusUniProtKB:P62320 · MGI:MGI:1914582 (SMD3 · Snrpd3)small nuclear ribonucleoprotein D3⌘
R. norvegicusNCBI:XP_001079870 · RGD:1597573
R. norvegicusNCBI:XP_001063748 · RGD:1560685
S. cerevisiaeUniProtKB:P43321 · SGD:S000004137 (YLR147C · SLT16 · SMD3)Core Sm protein Sm D3⌘
S. pombeUniProtKB:Q9UUC6 · GeneDB_Spombe:SPBC19C2.14 (SPBC19C2.14 · smd3)Sm snRNP core protein Smd3⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
SGD Disease Papers (1)
UniProtKB:P43321 · SGD:S000004137PMID:10369684 Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62
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