P-POD: Princeton Protein Orthology Database: GO3/Jaccard953

This family has 27 members: 3 Arabidopsis thaliana, 3 Caenorhabditis elegans, 4 Danio rerio, 2 Dictyostelium discoideum, 2 Drosophila melanogaster, 3 Gallus gallus, 2 Homo sapiens, 2 Mus musculus, 2 Rattus norvegicus, 2 Saccharomyces cerevisiae, 2 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Jaccard953
27 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_200954.1 · TAIR:locus:2161163 (AT5G61460 · MCI2_2 · MIM · MCI2.2 · ATRAD18)hypersensitive to MMS, irradiation and MMC⌘
A. thalianaNCBI:NP_197096.1 · TAIR:locus:2146107 (F1N13.60 · F1N13_60 · AT5G15920)⌘
A. thalianaNCBI:NP_196383.1 · TAIR:locus:2160289 (MBK20_10 · MBK20.10 · AT5G07660)⌘
C. elegansWB:WBGene00016151 (C27A2.1) · UniProtKB:Q18237⌘
C. elegansWB:WBGene00007694 (C23H4.6) · UniProtKB:Q93250⌘
C. elegansWB:WBGene00010056 (F54D5.14) · UniProtKB:Q9XTI9⌘
D. rerioENSEMBL:ENSDARP00000076181
D. rerioENSEMBL:ENSDARP00000076074
D. rerioZFIN:ZDB-GENE-061013-288 (zgc:152845) · UniProtKB:Q08BS1⌘
D. rerioUniProtKB:Q7SXF8 · ZFIN:ZDB-GENE-040426-1624 (pufa)PUF (Pumilio/FBF) domain-containing A⌘
D. discoideumUniProtKB:Q54I56 · dictyBase:DDB_G0288993 (smc6)structural maintenance of chromosome protein, AAA ATPase domain-containing protein⌘
D. discoideumUniProtKB:Q54FE3 · dictyBase:DDB_G0290919 (smc5)structural maintenance of chromosome protein, AAA ATPase domain-containing protein⌘
D. melanogasterFB:FBgn0052438 (CG7783 · CG32438 · DmSMC5 · SMC5 · Smc5) · UniProtKB:Q7YU66⌘
D. melanogasterUniProtKB:Q9VCB8 · FB:FBgn0039164 (CG5524)⌘
G. gallusNCBI:XP_419962 · ENTREZ:421950
G. gallusNCBI:XP_001233557 · ENTREZ:770223
G. gallusENTREZ:431608 · UniProtKB:Q5ZJY5 (IPI00587679 · RCJMB04_14g12 · SMC5L1 · RCJMB04_6o14 · SMC5_CHICK · Q5ZJY5 · SMC5)Structural maintenance of chromosomes protein 5⌘
H. sapiensENSEMBL:ENSG00000198887 · UniProtKB:Q8IY18 (IPI00413265 · SMC5L1 · Q8IY18 · SMC5_HUMAN · KIAA0594 · SMC5)Structural maintenance of chromosomes protein 5⌘
H. sapiensENSEMBL:ENSG00000163029 · UniProtKB:Q96SB8 (IPI00816217 · SMC6L1 · SMC6_HUMAN · Q96SB8 · IPI00154528 · SMC6)Structural maintenance of chromosomes protein 6⌘
M. musculusUniProtKB:Q8CG46 · MGI:MGI:2385088 (Smc5l1 · Smc5)structural maintenance of chromosomes 5⌘
M. musculusUniProtKB:Q924W5 · MGI:MGI:1914491 (Smc6l1 · Smc6 · SMC6)structural maintenance of chromosomes 6⌘
R. norvegicusNCBI:XP_215254 · RGD:1307492
R. norvegicusNCBI:XP_001068591 · RGD:1311214
S. cerevisiaeUniProtKB:Q08204 · SGD:S000005394 (YOL034W · SMC5)Structural maintenance of chromosomes (SMC) protein⌘
S. cerevisiaeUniProtKB:Q12749 · SGD:S000004375 (RHC18 · YLR383W · SMC6)Protein involved in structural maintenance of chromosomes⌘
S. pombeUniProtKB:O13710 · GeneDB_Spombe:SPAC14C4.02c (SPAC14C4.02c · smc5 · spr18)Smc5-6 complex SMC subunit Smc5⌘
S. pombeUniProtKB:P53692 · GeneDB_Spombe:SPCC5E4.06 (rad18 · smc6 · SPCC5E4.06)Smc5-6 complex SMC subunit Smc6⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
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