P-POD: Princeton Protein Orthology Database: GO3/Jaccard882

This family has 29 members: 3 Arabidopsis thaliana, 1 Caenorhabditis elegans, 1 Danio rerio, 1 Dictyostelium discoideum, 1 Drosophila melanogaster, 1 Gallus gallus, 1 Homo sapiens, 5 Mus musculus, 11 Rattus norvegicus, 2 Saccharomyces cerevisiae, 2 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Jaccard882
29 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_193236.1 · TAIR:locus:2129575 (DL3545W · AT4G15000 · FCAALL.99)⌘
A. thalianaNCBI:NP_188862.1 · TAIR:locus:2090434 (AT3G22230 · MKA23.22)⌘
A. thalianaNCBI:NP_180781.1 · TAIR:locus:2045467 (F22D22_3 · AT2G32220 · F22D22.3)⌘
C. elegansWB:WBGene00004441 (C53H9.1 · rpl-27) · UniProtKB:P91914⌘
D. rerioUniProtKB:Q7ZV82 · ZFIN:ZDB-GENE-030131-4343 (rpl27)ribosomal protein L27⌘
D. discoideumUniProtKB:Q55BE6 · dictyBase:DDB_G0271298 (rpl27)S60 ribosomal protein L27⌘
D. melanogasterUniProtKB:Q9VBN5 · FB:FBgn0039359 (CG4759 · RpL27e · RpL27)Ribosomal protein L27⌘
G. gallusENTREZ:396280 · UniProtKB:P61355 (RPL27 · IPI00577674 · RL27_CHICK · P61355)60S ribosomal protein L27⌘
H. sapiensENSEMBL:ENSG00000131469 · UniProtKB:P61353 (RL27_HUMAN · RPL27 · P61353 · IPI00219155)60S ribosomal protein L27⌘
M. musculusNCBI:XP_894555 · MGI:MGI:3643600
M. musculusNCBI:XP_922849 · MGI:MGI:3645348
M. musculusNCBI:NP_001103809 · MGI:MGI:3646174
M. musculusNCBI:XP_139514 · MGI:MGI:3647768
M. musculusUniProtKB:P61358 · MGI:MGI:98036 (Rpl27)ribosomal protein L27⌘
R. norvegicusNCBI:XP_001059658 · RGD:1585829 (LOC680960)similar to ribosomal protein L27⌘
R. norvegicusNCBI:XP_001072717 · RGD:1586335 (LOC689965)similar to ribosomal protein L27⌘
R. norvegicusNCBI:XP_001068279 · RGD:1585224
R. norvegicusNCBI:XP_213135 · RGD:1565900
R. norvegicusNCBI:XP_001068653 · RGD:1595207
R. norvegicusNCBI:XP_577823 · RGD:1561870 (RGD1561870)similar to ribosomal protein L27⌘
R. norvegicusNCBI:XP_573288 · RGD:1563835
R. norvegicusNCBI:XP_001077039 · RGD:1587430 (LOC691158)similar to ribosomal protein L27⌘
R. norvegicusNCBI:XP_578003 · RGD:1561545
R. norvegicusNCBI:XP_001075637 · RGD:1560069 (RGD1560069)similar to ribosomal protein L27⌘
R. norvegicusUniProtKB:P61354 · RGD:621192 (Rpl27)ribosomal protein L27⌘
S. cerevisiaeUniProtKB:P0C2H6 · SGD:S000001052 (YHR010W · RPL27 · RPL27A)Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Bp and has similarity to rat L27 ribosomal protein⌘
S. cerevisiaeUniProtKB:P0C2H7 · SGD:S000002879 (YDR471W · RPL27B)Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Ap and has similarity to rat L27 ribosomal protein⌘
S. pombeUniProtKB:O14388 · GeneDB_Spombe:SPBC685.07c (SPBC685.07c · rpl2701 · rpl27-1)60S ribosomal protein L27⌘
S. pombeUniProtKB:O74538 · GeneDB_Spombe:SPCC74.05 (SPCC74.05 · rpl2702 · rpl27-2)60S ribosomal protein L27⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu