P-POD: Princeton Protein Orthology Database: GO3/Jaccard518

This family has 41 members: 12 Arabidopsis thaliana, 2 Caenorhabditis elegans, 5 Danio rerio, 3 Dictyostelium discoideum, 3 Drosophila melanogaster, 2 Gallus gallus, 3 Homo sapiens, 3 Mus musculus, 3 Rattus norvegicus, 2 Saccharomyces cerevisiae, 3 Schizosaccharomyces pombe.

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GO3/Jaccard518
41 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_851061.1 · TAIR:locus:2178307 (AT5G23090 · MYJ24.8 · NF-YB13 · MYJ24_8)NUCLEAR FACTOR Y, SUBUNIT B13⌘
A. thalianaNCBI:NP_850277.2 · TAIR:locus:2061789 (T2N18.18 · AT2G37060 · NF-YB8 · T2N18_18)NUCLEAR FACTOR Y, SUBUNIT B8⌘
A. thalianaNCBI:NP_173616.2 · TAIR:locus:2201163 (T26F17_20 · T26F17.20 · LEC1 · EMB212 · AT1G21970 · NF-YB9)LEAFY COTYLEDON 1 · EMB 212 · EMBRYO DEFECTIVE 212 · NUCLEAR FACTOR Y, SUBUNIT B9⌘
A. thalianaNCBI:NP_182302.1 · TAIR:locus:2043293 (AT2G47810 · NF-YB5 · F17A22.20)NUCLEAR FACTOR Y, SUBUNIT B5⌘
A. thalianaNCBI:NP_568190.1 · TAIR:locus:2181529 (T22D6_130 · NF-YB12 · AT5G08190 · T22D6.130)NUCLEAR FACTOR Y, SUBUNIT B12⌘
A. thalianaNCBI:NP_172377.1 · TAIR:locus:2036064 (AT1G09030 · F7G19_10 · F7G19.10 · NF-YB4)NUCLEAR FACTOR Y, SUBUNIT B4⌘
A. thalianaNCBI:NP_178981.1 · TAIR:locus:2054095 (T10F5.11 · T10F5_11 · NF-YB7 · AT2G13570)NUCLEAR FACTOR Y, SUBUNIT B7⌘
A. thalianaNCBI:NP_193190.1 · TAIR:locus:2129885 (NF-YB3 · FCAALL.252 · AT4G14540 · DL3310W)NUCLEAR FACTOR Y, SUBUNIT B3⌘
A. thalianaNCBI:NP_190902.2 · TAIR:locus:2083941 (F4P12.40 · AT3G53340 · NF-YB10)NUCLEAR FACTOR Y, SUBUNIT B10⌘
A. thalianaNCBI:NP_199575.1 · TAIR:locus:2168983 (AT5G47640 · MNJ7_23 · MNJ7.23 · NF-YB2)NUCLEAR FACTOR Y, SUBUNIT B2⌘
A. thalianaNCBI:NP_199578.2 · TAIR:locus:2169028 (AT5G47670 · MNJ7.26 · MNJ7_26 · NF-YB6)NUCLEAR FACTOR Y, SUBUNIT B6⌘
A. thalianaNCBI:NP_850304.2 · TAIR:locus:2064996 (HAP3 · ATNF-YB1 · NF-YB1 · T7F6.5 · ATHAP3 · T7F6_5 · AT2G38880 · HAP3A)HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3 · NUCLEAR FACTOR Y, SUBUNIT B1 · HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3A · NUCLEAR FACTOR Y SUBUNIT B1⌘
C. elegansWB:WBGene00021132 (W10D9.4 · nfyb-1) · UniProtKB:O17286 (W10D9.4 · nfyb-1)Putative uncharacterized protein W10D9.4⌘⌘
C. elegansWB:WBGene00001092 (dro-1 · F53A2.5) · UniProtKB:O45550⌘
D. rerioENSEMBL:ENSDARP00000090543
D. rerioZFIN:ZDB-GENE-061013-797 (zgc:152914) · UniProtKB:Q08BR1⌘
D. rerioZFIN:ZDB-GENE-050417-13 (zgc:110552) · UniProtKB:Q561X4⌘
D. rerioUniProtKB:Q5CZV3 · ZFIN:ZDB-GENE-050306-25 (nfyb)nuclear transcription factor Y, beta⌘
D. rerioZFIN:ZDB-GENE-040426-1773 (zgc:73351) · UniProtKB:Q6PBL4⌘
D. discoideumUniProtKB:Q75JQ9 · dictyBase:DDB_G0272222 (ybl1)DNA polymerase epsilon p17 subunit 3, YB-like 1⌘
D. discoideumUniProtKB:Q55DJ5 · dictyBase:DDB_G0269638 (dr1)putative histone-like transcription factor⌘
D. discoideumUniProtKB:Q54WV0 · dictyBase:DDB_G0279419 (nfyB)putative histone-like transcription factor, putative CCAAT-binding transcription factor, chain B⌘
D. melanogasterFB:FBgn0028926 (CG4185 · dNC2 · BG:DS00929.3 · Dr1 · dDr1 · NC2beta) · UniProtKB:Q9VJQ5⌘
D. melanogasterFB:FBgn0032816 (NF-YB · BcDNA:RH50436 · CG10447) · UniProtKB:Q8ST61⌘
D. melanogasterFB:FBgn0043002 (CHRAC · CHRAC14 · ESTS:55A11T · CHRAC-14 · CG13399 · CG32956 · mary · Chrac-14 · 55A11T) · UniProtKB:Q9V444⌘
G. gallusENTREZ:424496 · UniProtKB:Q5ZMV3 (NC2B_CHICK · IPI00571608 · RCJMB04_1b9 · DR1 · Q5ZMV3)Protein Dr1⌘
G. gallusENTREZ:396205 · UniProtKB:P25207 (NFYB_CHICK · IPI00820911 · P25207 · NFYB · RCJMB04_7n24)Nuclear transcription factor Y subunit beta⌘
H. sapiensENSEMBL:ENSG00000148229 · UniProtKB:Q9NRF9 (DPOE3_HUMAN · POLE3 · CHRAC17 · Q9NRF9 · IPI00010141)DNA polymerase epsilon subunit 3⌘
H. sapiensENSEMBL:ENSG00000117505 · UniProtKB:Q01658 (NC2B_HUMAN · Q01658 · DR1 · IPI00008991)Protein Dr1⌘
H. sapiensENSEMBL:ENSG00000120837 · UniProtKB:P25208 (HAP3 · IPI00013217 · NFYB · NFYB_HUMAN · P25208)Nuclear transcription factor Y subunit beta⌘
M. musculusUniProtKB:Q9JKP7 · MGI:MGI:1933378 (YBL1 · Pole3)polymerase (DNA directed), epsilon 3 (p17 subunit)⌘
M. musculusUniProtKB:Q91WV0 · MGI:MGI:1100515 (NC2 · Dr1l · Dr1 · NC2beta)down-regulator of transcription 1⌘
M. musculusUniProtKB:P63139 · MGI:MGI:97317 (Nfyb · Cbf-A)nuclear transcription factor-Y beta⌘
R. norvegicusUniProtKB:Q642A5 · RGD:1359475 (Pole3)polymerase (DNA directed), epsilon 3 (p17 subunit)⌘
R. norvegicusUniProtKB:Q5XI68 · RGD:1305201 (Dr1)down-regulator of transcription 1⌘
R. norvegicusRGD:3172 (Nfyb) · UniProtKB:P63140 (Nfyb · NFYB_RAT · P63140 · IPI00208278)nuclear transcription factor-Y beta · Nuclear transcription factor Y subunit beta⌘⌘
S. cerevisiaeUniProtKB:P13434 · SGD:S000000117 (HAP3 · YBL021C)Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression⌘
S. cerevisiaeUniProtKB:Q92317 · SGD:S000002805 (NCB2 · YDR1 · YDR397C)Subunit of a heterodimeric NC2 transcription regulator complex with Bur6p⌘
S. pombeUniProtKB:P87174 · GeneDB_Spombe:SPBC3D6.09 (SPBC3D6.09 · dpb4)DNA polymerase epsilon subunit Dpb4⌘
S. pombeUniProtKB:P36611 · GeneDB_Spombe:SPAC23C11.08 (SPAC23C11.08 · php3)CCAAT-binding factor complex subunit Php3⌘
S. pombeUniProtKB:O14348 · GeneDB_Spombe:SPBC30D10.02 (SPBC30D10.02)transcription corepressor⌘
ProteinPublicationCurator Notes
UniProtKB:P13434 · SGD:S000000117PMID:15756621 Guerrero CA, et al. Salt-dependent expression of ammonium assimilation genes in the halotolerant yeast, Debaryomyces hansenii. Curr Genet. 2005 Mar;47(3):163-71.The D. hansenii protein DhGDH1 was expressed in S. cerevisiae, but complementation was not directly tested. High-level expression of DhGDH1 expression was dependent on GLN3, HAP2, and HAP3.
UniProtKB:Q92317 · SGD:S000002805PMID:9023340 Kim S, et al. The Dr1/DRAP1 heterodimer is a global repressor of transcription in vivo. Proc Natl Acad Sci U S A. 1997 Feb 4;94(3):820-5.The H. sapiens protein Q01658 complements a homologous mutation in S. cerevisiae. Human Dr1 complements a yeast ncb2 (aka ydr1) mutant.
UniProtKB:Q92317 · SGD:S000002805PMID:10675336 Xie J, et al. A single point mutation in TFIIA suppresses NC2 requirement in vivo. EMBO J. 2000 Feb 15;19(4):672-82.The H. sapiens protein Q01658 complements a homologous mutation in S. cerevisiae.
DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu