P-POD: Princeton Protein Orthology Database: GO3/Jaccard409

This family has 49 members: 5 Arabidopsis thaliana, 4 Caenorhabditis elegans, 4 Danio rerio, 5 Dictyostelium discoideum, 4 Drosophila melanogaster, 3 Escherichia coli, 4 Gallus gallus, 4 Homo sapiens, 4 Mus musculus, 4 Rattus norvegicus, 4 Saccharomyces cerevisiae, 4 Schizosaccharomyces pombe.

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GO3/Jaccard409
49 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2155528 (AT5G67220 · K21H1.18 · K21H1_18) · NCBI:NP_201523.1⌘
A. thalianaNCBI:NP_190533.3 · TAIR:locus:2114713 (T9C5.230 · AT3G49640)⌘
A. thalianaNCBI:NP_567149.2 · TAIR:locus:2087408 (AT3G63510 · MAA21.140)⌘
A. thalianaNCBI:NP_195600.1 · TAIR:locus:2141821
A. thalianaNCBI:NP_199608.1 · TAIR:locus:2152758 (K16F13.5 · K16F13_5 · AT5G47970)⌘
C. elegansWB:WBGene00016674 (C45G9.2) · UniProtKB:Q09504⌘
C. elegansWB:WBGene00021377 (Y37E11B.5) · UniProtKB:Q9TYN2⌘
C. elegansWB:WBGene00009452 (F36A2.2) · UniProtKB:Q9XVN8⌘
C. elegansWB:WBGene00013201 (Y54E5A.6) · UniProtKB:Q9XWJ9⌘
D. rerioENSEMBL:ENSDARP00000088702
D. rerioZFIN:ZDB-GENE-040801-233 (zgc:92033) · UniProtKB:Q5RIX6⌘
D. rerioZFIN:ZDB-GENE-040426-1260 (zgc:63779) · UniProtKB:Q6PEH0⌘
D. rerioUniProtKB:B0S7L0 · ZFIN:ZDB-GENE-030131-1435 (dus1l)dihydrouridine synthase 1-like (S. cerevisiae)⌘
D. discoideumNCBI:EAL65553.1 · dictyBase:DDB_G0283877 (dus2l)tRNA-dihydrouridine synthase 2-like protein⌘
D. discoideumNCBI:EAL68003.1 · dictyBase:DDB_G0278803 (dus1l)tRNA-dihydrouridine synthase 1-like protein⌘
D. discoideumNCBI:EAL61664.1 · dictyBase:DDB_G0291360 (dus4l)tRNA-dihydrouridine synthase 4-like protein⌘
D. discoideumUniProtKB:Q54CU9 · dictyBase:DDB_G0292686 (dus3l)tRNA-dihydrouridine synthase 3-like protein, CCCH-type zinc finger-containing protein⌘
D. discoideumdictyBase:DDB_G0277081 (DDB_G0277081) · UniProtKB:Q86L21⌘
D. melanogasterFB:FBgn0032819 (CG10463) · UniProtKB:Q9VIS4⌘
D. melanogasterUniProtKB:Q9VJ06 · FB:FBgn0032750 (anon-WO0118547.200 · CG10495)⌘
D. melanogasterFB:FBgn0031238 (CG3645) · UniProtKB:Q9VPM1⌘
D. melanogasterFB:FBgn0030554 (CG1434) · UniProtKB:Q9VY45⌘
E. coliUniProtKB:P32695 · ECOLI:EG11932-MONOMER (DusA · yjbN · b4049 · dusA · ECK4041)tRNA-dihydrouridine synthase A⌘
E. coliUniProtKB:P0ABT5 · ECOLI:EG11311-MONOMER (b3260 · ECK3247 · dusB · yhdG · DusB)tRNA dihydrouridine synthase⌘
E. coliUniProtKB:P33371 · ECOLI:EG12022-MONOMER (b2140 · yohI · DusC · dusC · ECK2133)tRNA dihydrouridine synthase⌘
G. gallusNCBI:XP_414079 · ENTREZ:415712
G. gallusNCBI:XP_425899 · ENTREZ:428339
G. gallusNCBI:XP_415637 · ENTREZ:417381
G. gallusNCBI:XP_001231915 · ENTREZ:769352
H. sapiensENSEMBL:ENSG00000169718 · UniProtKB:Q6P1R4 (Q6P1R4 · DUS1L_HUMAN · IPI00335251 · DUS1L)tRNA-dihydrouridine synthase 1-like⌘
H. sapiensENSEMBL:ENSG00000167264 · UniProtKB:Q9NX74 (Q9NX74 · DUS2L_HUMAN · IPI00015804 · DUS2 · DUS2L)tRNA-dihydrouridine synthase 2-like⌘
H. sapiensENSEMBL:ENSG00000141994 · UniProtKB:Q96G46 (DUS3L · DUS3L_HUMAN · IPI00186125 · IPI00640947 · IPI00784107 · Q96G46)tRNA-dihydrouridine synthase 3-like⌘
H. sapiensENSEMBL:ENSG00000105865 · UniProtKB:O95620 (IPI00783809 · DUS4L_HUMAN · O95620 · IPI00021410 · DUS4L)tRNA-dihydrouridine synthase 4-like⌘
M. musculusUniProtKB:Q8C2P3 · MGI:MGI:1915980 (Dus1l)dihydrouridine synthase 1-like (S. cerevisiae)⌘
M. musculusUniProtKB:Q9D7B1 · MGI:MGI:1913619 (Dus2l)dihydrouridine synthase 2-like (SMM1, S. cerevisiae)⌘
M. musculusUniProtKB:Q91XI1 · MGI:MGI:2147092 (Dus3l)dihydrouridine synthase 3-like (S. cerevisiae)⌘
M. musculusUniProtKB:Q32M08 · MGI:MGI:1919166 (Dus4l)dihydrouridine synthase 4-like (S. cerevisiae)⌘
R. norvegicusNCBI:XP_214665 · RGD:1305612 (Dus2l)dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)⌘
R. norvegicusNCBI:XP_001076117 · RGD:1311445 (Dus4l)dihydrouridine synthase 4-like (S. cerevisiae)⌘
R. norvegicusUniProtKB:Q8K582 · RGD:708389 (Pp3111)PP3111 protein⌘
R. norvegicusUniProtKB:Q3KRC5 · RGD:1563228 (Dus3l)dihydrouridine synthase 3-like (S. cerevisiae)⌘
S. cerevisiaeUniProtKB:P53759 · SGD:S000004545 (DUS1 · YML080W)Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus3p, and Dus4p⌘
S. cerevisiaeUniProtKB:P53720 · SGD:S000005298 (YNR015W · SMM1 · DUS2)Dihydrouridine synthase, member of a family of dihydrouridine synthases including Dus1p, Smm1p, Dus3p, and Dus4p⌘
S. cerevisiaeUniProtKB:Q06053 · SGD:S000004393 (YLR401C · DUS3)Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p⌘
S. cerevisiaeUniProtKB:Q06063 · SGD:S000004397 (YLR405W · DUS4)Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus3p⌘
S. pombeUniProtKB:Q9HGN6 · GeneDB_Spombe:SPBC36B7.04 (SPBC36B7.04)tRNA dihydrouridine synthase Dus1⌘
S. pombeUniProtKB:O74731 · GeneDB_Spombe:SPBC1709.06 (SPBC1709.06 · dus2)tRNA dihydrouridine synthase Dus2⌘
S. pombeUniProtKB:Q9UTH9 · GeneDB_Spombe:SPAC16.04 (dus3 · SPAC16.04)tRNA dihydrouridine synthase Dus3⌘
S. pombeUniProtKB:O74553 · GeneDB_Spombe:SPCC777.15 (SPCC777.15)tRNA dihydrouridine synthase Dus4⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu