P-POD: Princeton Protein Orthology Database: GO3/Jaccard354

This family has 55 members: 6 Arabidopsis thaliana, 4 Caenorhabditis elegans, 5 Danio rerio, 5 Dictyostelium discoideum, 3 Drosophila melanogaster, 4 Gallus gallus, 7 Homo sapiens, 5 Mus musculus, 9 Rattus norvegicus, 3 Saccharomyces cerevisiae, 4 Schizosaccharomyces pombe.

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GO3/Jaccard354
55 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2091102 (MLP3.4 · AT3G07590) · NCBI:NP_187416.1⌘
A. thalianaNCBI:NP_192193.1 · TAIR:locus:2140240 (T5J8.16 · T5J8_16 · AT4G02840)⌘
A. thalianaNCBI:NP_198124.1 · TAIR:locus:2180295 (T1G16.50 · AT5G27720 · T1G16_50 · emb1644)embryo defective 1644⌘
A. thalianaNCBI:NP_563682.1 · TAIR:locus:2014480 (F15K9_7 · AT1G03330 · F15K9.7)⌘
A. thalianaNCBI:NP_564119.1 · TAIR:locus:2030442 (AT1G20580 · F5M15_9 · F5M15.9)⌘
A. thalianaNCBI:NP_177757.1 · TAIR:locus:2014589 (F15M4.20 · SmD3 · AT1G76300)snRNP core protein SmD3⌘
C. elegansWB:WBGene00003078 (lsm-4 · F32A5.7) · UniProtKB:Q19952⌘
C. elegansWB:WBGene00004916 (snr-3 · T28D9.10) · UniProtKB:Q10013⌘
C. elegansWB:WBGene00004914 (snr-1 · Y116A8C.42) · UniProtKB:Q17348⌘
C. elegansWB:WBGene00001808 (T10G3.6 · gut-2) · UniProtKB:P92022⌘
D. rerioENSEMBL:ENSDARP00000087369
D. rerioZFIN:ZDB-GENE-000616-10 (smx5) · UniProtKB:Q5RKP8⌘
D. rerioUniProtKB:Q6P6E4 · ZFIN:ZDB-GENE-040426-1652 (lsm4)LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)⌘
D. rerioUniProtKB:Q8JHH1 · ZFIN:ZDB-GENE-020419-14 (snrpd1)small nuclear ribonucleoprotein D1 polypeptide⌘
D. rerioUniProtKB:Q6IQ56 · ZFIN:ZDB-GENE-040625-55 (snrpd3)small nuclear ribonucleoprotein D3 polypeptide⌘
D. discoideumUniProtKB:Q54TF6 · dictyBase:DDB_G0281779 (lsm2)LSM (like-Sm) domain-containing protein, putative U6 small nuclear ribonucleoparticle-associated protein⌘
D. discoideumUniProtKB:Q54KX4 · dictyBase:DDB_G0287053 (lsm4)LSM (like-Sm) domain-containing protein, putative U6 small nuclear ribonucleoparticle-associated protein⌘
D. discoideumUniProtKB:Q54F84 · dictyBase:DDB_G0291015 (DDB_G0291015)putative small nuclear ribonucleoparticle-associated protein, LSM (like-Sm) domain-containing protein⌘
D. discoideumUniProtKB:Q54YX5 · dictyBase:DDB_G0278027 (snrpD1)LSM (like-Sm) domain-containing protein, putative small nuclear ribonucleoprotein D1⌘
D. discoideumUniProtKB:Q86L45 · dictyBase:DDB_G0273003 (snrpD3)LSM (like-Sm) domain-containing protein, putative small nuclear ribonucleoprotein D3⌘
D. melanogasterUniProtKB:Q9VU02 · FB:FBgn0016940 (snRNP-69D · snRNP · CG10753 · BcDNA:RE39488 · SmD1 · snRNP69D)small nuclear ribonucleoprotein at 69D⌘
D. melanogasterUniProtKB:O44437 · FB:FBgn0023167 (guf2 · guf · l(2)131/7 · SYM10 · SmD3 · gutfeeling · l(2)154/1 · CG8427 · l(2)90/37)snRNP Sm D3 · Sm D3 · gut feeling · Small ribonucleoprotein Sm D3⌘
D. melanogasterFB:FBgn0032240 (CG31990 · CG17768 · CG5356 · BcDNA:RE35747) · UniProtKB:Q9VKW8⌘
G. gallusNCBI:XP_417768 · ENTREZ:419621
G. gallusNCBI:XP_001235936 · ENTREZ:776411
G. gallusNCBI:XP_418245 · ENTREZ:420128
G. gallusUniProtKB:Q5ZL58 (Q5ZL58 · RCJMB04_7j2 · IPI00604392) · ENTREZ:416947⌘
H. sapiensENSEMBL:ENSG00000181817 · UniProtKB:Q969L4 (LSM10_HUMAN · IPI00056416 · Q969L4 · LSM10)U7 snRNA-associated Sm-like protein LSm10⌘
H. sapiensENSEMBL:ENSG00000204392 · UniProtKB:Q9Y333 (G7B · C6orf28 · IPI00032460 · LSM2 · LSM2_HUMAN · Q9Y333)U6 snRNA-associated Sm-like protein LSm2⌘
H. sapiensENSEMBL:ENSG00000172850 · UniProtKB:Q9Y333 (G7B · C6orf28 · IPI00032460 · LSM2 · LSM2_HUMAN · Q9Y333)U6 snRNA-associated Sm-like protein LSm2⌘
H. sapiensENSEMBL:ENSG00000111987 · UniProtKB:Q9Y333 (G7B · C6orf28 · IPI00032460 · LSM2 · LSM2_HUMAN · Q9Y333)U6 snRNA-associated Sm-like protein LSm2⌘
H. sapiensENSEMBL:ENSG00000130520 · UniProtKB:Q9Y4Z0 (Q9Y4Z0 · LSM4_HUMAN · LSM4 · IPI00294955)U6 snRNA-associated Sm-like protein LSm4⌘
H. sapiensENSEMBL:ENSG00000167088 · UniProtKB:P62314 (IPI00302850 · SNRPD1 · P62314 · SMD1_HUMAN)Small nuclear ribonucleoprotein Sm D1⌘
H. sapiensENSEMBL:ENSG00000100028 · UniProtKB:P62318 (IPI00017964 · SNRPD3 · P62318 · SMD3_HUMAN)Small nuclear ribonucleoprotein Sm D3⌘
M. musculusUniProtKB:Q8QZX5 · MGI:MGI:2151045 (Lsm10)U7 snRNP-specific Sm-like protein LSM10⌘
M. musculusUniProtKB:O35900 · MGI:MGI:90676 (snRNP · Dmapl · D17H6S56E2 · Lsm2 · SmX5 · Sm-X5 · D17H6S56E-2 · G7b · Dmpkap)LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)⌘
M. musculusUniProtKB:Q9QXA5 · MGI:MGI:1354692 (Lsm4)LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)⌘
M. musculusUniProtKB:P62315 · MGI:MGI:98344 (Snrpd1 · SMD1)small nuclear ribonucleoprotein D1⌘
M. musculusUniProtKB:P62320 · MGI:MGI:1914582 (SMD3 · Snrpd3)small nuclear ribonucleoprotein D3⌘
R. norvegicusNCBI:XP_001079870 · RGD:1597573
R. norvegicusNCBI:XP_226489 · RGD:1560193
R. norvegicusNCBI:XP_001071688 · RGD:1586777
R. norvegicusNCBI:XP_214621 · RGD:1306345 (Snrpd1)small nuclear ribonucleoprotein D1⌘
R. norvegicusNCBI:XP_345582 · RGD:1584914 (Lsm10)LSM10, U7 small nuclear RNA associated⌘
R. norvegicusNCBI:XP_214318 · RGD:1306808 (Lsm4)LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)⌘
R. norvegicusNCBI:XP_001063748 · RGD:1560685
R. norvegicusRGD:1598536 · UniProtKB:Q6MG66
R. norvegicusUniProtKB:Q6MG66 · RGD:1593907
S. cerevisiaeUniProtKB:P38203 · SGD:S000000122 (YBL026W · SMX5 · SNP3 · LSM2)Lsm (Like Sm) protein⌘
S. cerevisiaeUniProtKB:Q02260 · SGD:S000003306 (SPP92 · SMD1 · YGR074W)Core Sm protein Sm D1⌘
S. cerevisiaeUniProtKB:P43321 · SGD:S000004137 (YLR147C · SLT16 · SMD3)Core Sm protein Sm D3⌘
S. pombeUniProtKB:O94408 · GeneDB_Spombe:SPCC1620.01c (lsm2 · SPCC1620.01c)U6 snRNP-associated protein core protein⌘
S. pombeUniProtKB:O14352 · GeneDB_Spombe:SPBC30D10.06 (SPBC30D10.06 · lsm4)U6 snRNP-associated protein Lsm4⌘
S. pombeUniProtKB:O42661 · GeneDB_Spombe:SPAC27D7.07c (SPAC27D7.07c · smd1)Sm snRNP core protein Smd1⌘
S. pombeUniProtKB:Q9UUC6 · GeneDB_Spombe:SPBC19C2.14 (SPBC19C2.14 · smd3)Sm snRNP core protein Smd3⌘
ProteinPublicationCurator Notes
UniProtKB:Q02260 · SGD:S000003306PMID:8346029 Rymond BC, et al. Human snRNP polypeptide D1 promotes pre-mRNA splicing in yeast and defines nonessential yeast Smd1p sequences. Nucleic Acids Res. 1993 Jul 25;21(15):3501-5.The H. sapiens protein P62314 complements a homologous mutation in S. cerevisiae.
DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
SGD Disease Papers (2)
UniProtKB:P43321 · SGD:S000004137PMID:10369684 Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62
UniProtKB:P43321 · SGD:S000004137PMID:10369684 Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62
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