P-POD: Princeton Protein Orthology Database: GO3/Jaccard295

This family has 63 members: 11 Arabidopsis thaliana, 5 Caenorhabditis elegans, 6 Danio rerio, 6 Dictyostelium discoideum, 5 Drosophila melanogaster, 3 Gallus gallus, 5 Homo sapiens, 7 Mus musculus, 5 Rattus norvegicus, 5 Saccharomyces cerevisiae, 5 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Jaccard295
63 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaNCBI:NP_192252.1 · TAIR:locus:2128751 (AT4G03430 · F9H3_5 · STA1 · F9H3.5 · EMB2770)EMBRYO DEFECTIVE 2770 · STABILIZED 1⌘
A. thalianaNCBI:NP_188329.1 · TAIR:locus:2086132 (HCF107 · K14A17.11 · AT3G17040)HIGH CHLOROPHYLL FLUORESCENT 107⌘
A. thalianaNCBI:NP_198226.1 · TAIR:locus:2184236
A. thalianaNCBI:NP_173218.2 · TAIR:locus:2007973 (ATCSTF77 · AT1G17760 · F11A6_10 · F11A6.10 · CSTF77)ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77⌘
A. thalianaNCBI:NP_187927.1 · TAIR:locus:2089999 (AT3G13210 · MJG19.24)⌘
A. thalianaNCBI:NP_199411.1 · TAIR:locus:2161363 (MCL19_3 · MCL19.3 · AT5G45990)⌘
A. thalianaNCBI:NP_563700.1 · TAIR:locus:2020265 (F20D22.14 · PRP39 · AT1G04080)⌘
A. thalianaNCBI:NP_194158.3 · TAIR:locus:2135892 (T22A6_100 · T22A6.100 · AT4G24270)⌘
A. thalianaNCBI:NP_198992.2 · TAIR:locus:2152965 (AT5G41770 · K16L22_5 · K16L22.5)⌘
A. thalianaNCBI:NP_199452.2 · TAIR:locus:2170453
A. thalianaNCBI:NP_566944.1 · TAIR:locus:2080853 (AT3G51110 · F24M12.150)⌘
C. elegansWB:WBGene00019762 (M03F8.3) · UniProtKB:A9D4S6⌘
C. elegansWB:WBGene00016837 (C50F2.3) · UniProtKB:P91175⌘
C. elegansWB:WBGene00006307 (suf-1 · F28C6.6) · UniProtKB:Q19866⌘
C. elegansWB:WBGene00017768 (F25B4.5) · UniProtKB:Q22961⌘
C. elegansWB:WBGene00013343 (Y59A8B.6) · UniProtKB:Q9GRZ2⌘
D. rerioENSEMBL:ENSDARP00000010851
D. rerioUniProtKB:Q1JPZ7 · ZFIN:ZDB-GENE-030616-420 (prpf39)PRP39 pre-mRNA processing factor 39 homolog (yeast)⌘
D. rerioUniProtKB:Q6PH55 · ZFIN:ZDB-GENE-030131-2575 (c20orf14)c20orf14 homolog (H. sapiens)⌘
D. rerioUniProtKB:Q7ZVG5 · ZFIN:ZDB-GENE-040426-1997 (cstf3)cleavage stimulation factor, 3' pre-RNA, subunit 3⌘
D. rerioZFIN:ZDB-GENE-040426-694 (zgc:55327) · UniProtKB:Q803R7⌘
D. rerioUniProtKB:Q6PGZ8 · ZFIN:ZDB-GENE-040426-685 (xab2)XPA binding protein 2⌘
D. discoideumUniProtKB:Q54XP4 · dictyBase:DDB_G0278819 (Crn · DDB_G0278819)HAT repeat-containing protein⌘
D. discoideumUniProtKB:Q54Z08 · dictyBase:DDB_G0277977 (xab2)TPR-like helical domain-containing protein, tetratricopeptide-like helical domain-containing protein (TPR)⌘
D. discoideumUniProtKB:Q54LG7 · dictyBase:DDB_G0286645 (cstf3)cleavage stimulation factor subunit 3, suppressor of forked (suf) domain-containing protein⌘
D. discoideumUniProtKB:Q54R91 · dictyBase:DDB_G0283307 (prpf39)tetratricopeptide-like helical domain-containing protein (TPR), putative U1 small nuclear ribonucleoparticle-associated protein, pre-mRNA processing factor 39⌘
D. discoideumdictyBase:DDB_G0280363 (DDB_G0280363) · UniProtKB:Q54VF5⌘
D. discoideumUniProtKB:Q55A15 · dictyBase:DDB_G0272374 (PRP6 · prpf6)pre-mRNA processing factor 6, TPR repeat-containing protein, U5 small nuclear ribonucleoprotein-associated protein, PRP1 splicing factor domain-containing protein⌘
D. melanogasterUniProtKB:P17886 · FB:FBgn0000377 (l(1)2 · N10 · CG18842 · RC63 · l(1)crn · l(1)2Fa · Crn · EG:30B8.1 · N5 · CG3193 · l30 · crn · l(1)CRN · yok · 62D9.a · l(1)N7 · yolky)crooked neck⌘
D. melanogasterUniProtKB:P25991 · FB:FBgn0003559 (l(1)EC235 · CstF-77 · l(1)3DES · CstF77 · CG17170 · l(1)X3 · 3-DES · R-9-18 · su(f) · l3DES · l(1)X1 · su[+]-f · l(1)su(f) · SU-f · 29 · su-f · 28 · l(1)G0393 · 3DES · lethal3Des · l(1)R-9-18 · EC235 · Su(f) · 19 · l(1)20Eb · R9-18)section 29 · section 19 · suppressor of forked · section 28⌘
D. melanogasterFB:FBgn0033859 (XAB2 · CG6197) · UniProtKB:A1Z9G2⌘
D. melanogasterFB:FBgn0039600 (Prp39 · CG1646) · UniProtKB:Q7KRW8⌘
D. melanogasterFB:FBgn0036828 (BcDNA:LD43276 · CG6841 · Prp6) · UniProtKB:Q9VVU6⌘
G. gallusNCBI:XP_417426 · ENTREZ:419254
G. gallusNCBI:XP_419315 · ENTREZ:421243
G. gallusUniProtKB:Q5F4A0 (IPI00592390 · Q5F4A0 · RCJMB04_1m7) · ENTREZ:421595⌘
H. sapiensENSEMBL:ENSG00000101343 · UniProtKB:Q9BZJ0 (CRNL1_HUMAN · IPI00219317 · IPI00219320 · IPI00793127 · CRN · IPI00219318 · CRNKL1 · MSTP021 · CGI-201 · Q9BZJ0 · IPI00177437)Crooked neck-like protein 1⌘
H. sapiensENSEMBL:ENSG00000176102 · UniProtKB:Q12996 (CSTF3 · CSTF3_HUMAN · IPI00015195 · Q12996)Cleavage stimulation factor 77 kDa subunit⌘
H. sapiensENSEMBL:ENSG00000185246 · UniProtKB:Q86UA1 (IPI00789246 · PRPF39 · IPI00878754 · Q86UA1 · PRP39_HUMAN)Pre-mRNA-processing factor 39⌘
H. sapiensENSEMBL:ENSG00000101161 · UniProtKB:O94906 (IPI00305068 · PRPF6 · PRP6_HUMAN · C20orf14 · O94906)Pre-mRNA-processing factor 6⌘
H. sapiensENSEMBL:ENSG00000076924 · UniProtKB:Q9HCS7 (SYF1 · Q9HCS7 · IPI00163084 · XAB2 · KIAA1177 · PP3898 · HCNP · SYF1_HUMAN)Pre-mRNA-splicing factor SYF1⌘
M. musculusNCBI:XP_621703 · MGI:MGI:3643846
M. musculusUniProtKB:P63154 · MGI:MGI:1914127 (Crnkl1 · crn)Crn, crooked neck-like 1 (Drosophila)⌘
M. musculusUniProtKB:Q99LI7 · MGI:MGI:1351825 (Cstf3)cleavage stimulation factor, 3' pre-RNA, subunit 3⌘
M. musculusUniProtKB:Q8K2Z2 · MGI:MGI:104602 (Prpf39 · Srcs1)PRP39 pre-mRNA processing factor 39 homolog (yeast)⌘
M. musculusUniProtKB:Q91YR7 · MGI:MGI:1922946 (Prpf6 · ANT-1 · U5-102K)PRP6 pre-mRNA splicing factor 6 homolog (yeast)⌘
M. musculusUniProtKB:Q9DCD2 · MGI:MGI:1914689 (Xab2)XPA binding protein 2⌘
M. musculusMGI:MGI:3642953 · NCBI:XP_621704
R. norvegicusNCBI:XP_001076405 · RGD:1308702 (Prpf39)PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)⌘
R. norvegicusUniProtKB:P63155 · RGD:620507 (Crnkl1)crooked neck pre-mRNA splicing factor-like 1 (Drosophila)⌘
R. norvegicusUniProtKB:Q99PK0 (Syf1 · Q99PK0 · Ath55 · SYF1_RAT · IPI00201089 · Xab2) · RGD:621217 (Xab2)Pre-mRNA-splicing factor SYF1 · XPA binding protein 2⌘⌘
R. norvegicusUniProtKB:A0JPN7 · RGD:1305901 (Cstf3)cleavage stimulation factor, 3' pre-RNA, subunit 3⌘
R. norvegicusUniProtKB:A1A5S1 · RGD:1307103 (Prpf6)PRP6 pre-mRNA splicing factor 6 homolog (S. cerevisiae)⌘
S. cerevisiaeUniProtKB:Q12309 · SGD:S000004107 (NTC77 · CLF1 · YLR117C · SYF3)Essential splicesome assembly factor⌘
S. cerevisiaeUniProtKB:Q03776 · SGD:S000002643 (SNU65 · PRP42 · MUD16 · YDR235W)U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis⌘
S. cerevisiaeUniProtKB:P19735 · SGD:S000000259 (RNA6 · YBR055C · TSM7269 · PRP6)Splicing factor, component of the U4/U6-U5 snRNP complex⌘
S. cerevisiaeUniProtKB:P25298 · SGD:S000004665 (RNA14 · YMR061W)Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends⌘
S. cerevisiaeUniProtKB:Q04048 · SGD:S000002824 (SYF1 · YDR416W · NTC90)Component of the spliceosome complex involved in pre-mRNA splicing⌘
S. pombeUniProtKB:P87312 · GeneDB_Spombe:SPBC31F10.11c (cwf4 · SPBC31F10.11c · syf3)complexed with Cdc5 protein Cwf4⌘
S. pombeUniProtKB:Q12381 · GeneDB_Spombe:SPBC6B1.07 (SPBC6B1.07 · prp1 · zer1)U4/U6 x U5 tri-snRNP complex subunit Prp1⌘
S. pombeUniProtKB:O74970 · GeneDB_Spombe:SPBC4B4.09 (SPBC4B4.09 · usp105 · prp39)U1 snRNP-associated protein Usp105⌘
S. pombeUniProtKB:O14233 · GeneDB_Spombe:SPAC6F12.17 (SPAC6F12.17 · rna14)mRNA cleavage and polyadenylation specificity factor complex subunit Rna14⌘
S. pombeUniProtKB:Q9P7R9 · GeneDB_Spombe:SPBC211.02c (syf1 · SPBC211.02c · cwf3)complexed with Cdc5 protein Cwf3⌘
ProteinPublicationCurator Notes
UniProtKB:Q12309 · SGD:S000004107PMID:10445879 Chung S, et al. Yeast ortholog of the Drosophila crooked neck protein promotes spliceosome assembly through stable U4/U6.U5 snRNP addition. RNA. 1999 Aug;5(8):1042-54.The D. melanogaster protein CG3193-PA complements a homologous mutation in S. cerevisiae.
DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu