P-POD: Princeton Protein Orthology Database: GO3/Jaccard221

This family has 76 members: 8 Arabidopsis thaliana, 5 Caenorhabditis elegans, 5 Danio rerio, 7 Dictyostelium discoideum, 6 Drosophila melanogaster, 1 Escherichia coli, 10 Gallus gallus, 8 Homo sapiens, 7 Mus musculus, 9 Rattus norvegicus, 5 Saccharomyces cerevisiae, 5 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Jaccard221
76 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2059969 (AT2G42270 · T24P15.18 · T24P15_18) · NCBI:NP_181756.1⌘
A. thalianaNCBI:NP_001078482.1 · TAIR:locus:2125677
A. thalianaNCBI:NP_189410.2 · TAIR:locus:2089144 (RCK · ROCK-N-ROLLERS · MER3 · AT3G27730 · MGF10.13)⌘
A. thalianaNCBI:NP_565338.1 · TAIR:locus:2063648 (AT2G06990 · HEN2 · T4E14_10 · T4E14.10)hua enhancer 2⌘
A. thalianaNCBI:NP_176185.1 · TAIR:locus:2026001 (AT1G59760 · F23H11_8 · F23H11.8)⌘
A. thalianaNCBI:NP_190280.2 · TAIR:locus:2075566 (F13I12.10 · AT3G46960)⌘
A. thalianaNCBI:NP_173520.1 · TAIR:locus:2037375 (F9H16_5 · emb1507 · F9H16.5 · AT1G20960)embryo defective 1507⌘
A. thalianaNCBI:NP_200922.2 · TAIR:locus:2159451 (MAF19.14 · AT5G61140 · MAF19_14)⌘
C. elegansWB:WBGene00012896 (Y46G5A.4) · UniProtKB:Q9U2G0 (Y46G5A.4 · U520_CAEEL)Putative U5 small nuclear ribonucleoprotein 200 kDa helicase⌘⌘
C. elegansWB:WBGene00012342 (mtr-4 · W08D2.7) · UniProtKB:Q23223⌘
C. elegansWB:WBGene00020964 (polq-1 · W03A3.2) · UniProtKB:A0FLQ6⌘
C. elegansWB:WBGene00008502 (F01G4.3) · UniProtKB:Q19103⌘
C. elegansWB:WBGene00021905 (hel-308 · Y55B1AL.3) · UniProtKB:Q9N389⌘
D. rerioENSEMBL:ENSDARP00000024380
D. rerioENSEMBL:ENSDARG00000068922 · UniProtKB:A2BIH3
D. rerioUniProtKB:Q1LVP8 · ZFIN:ZDB-GENE-060503-421 (helq)helicase, POLQ-like⌘
D. rerioUniProtKB:Q1LWQ1 · ZFIN:ZDB-GENE-010430-5 (skiv2l)superkiller viralicidic activity 2 (S. cerevisiae homolog)-like⌘
D. rerioZFIN:ZDB-GENE-040724-232 (si:rp71-1p14.5) · UniProtKB:Q6ZM94⌘
D. discoideumUniProtKB:Q54G57 · dictyBase:DDB_G0290389 (ascc3)activating signal cointegrator 1 complex subunit, DEAD/DEAH box helicase, Sec63 domain-containing protein⌘
D. discoideumdictyBase:DDB_G0279107 (DDB_G0279107) · UniProtKB:Q54X98⌘
D. discoideumUniProtKB:Q55CI8 · dictyBase:DDB_G0270042 (ascc3l)DEAD/DEAH box helicase, U5 small nuclear ribonucleoprotein 200 kDa helicase, Sec63 domain-containing protein⌘
D. discoideumUniProtKB:Q86HT8 · dictyBase:DDB_G0274421 (DDB_G0274421)Similar to Thermotoga maritima. DNA-directed DNA polymerase I.⌘
D. discoideumUniProtKB:Q86IE2 · dictyBase:DDB_G0275633 (DDB_G0275633)superkiller viralicidic activity 2-like protein, DEAD/DEAH box helicase⌘
D. discoideumUniProtKB:Q86K90 · dictyBase:DDB_G0277211 (DDB_G0277211)superkiller viralicidic activity 2-like protein, DEAD/DEAH box helicase⌘
D. discoideumUniProtKB:Q86KS9 · dictyBase:DDB_G0277751 (DDB_G0277751)Similar to Mus musculus (Mouse). DNA polymerase theta short isoform.⌘
D. melanogasterUniProtKB:Q9VUV9 · FB:FBgn0036548 (Brr2 · cg5931 · anon-EST:Liang-1.21 · CG5931)clone 1.21⌘
D. melanogasterUniProtKB:Q5BI65 · FB:FBgn0002905 (Mus308 · CG6019 · Nuclease-3 · AAF54858 · mus308 · 0443/09 · Nuc3 · mus-308)Pol theta · mutagen-sensitive 308⌘
D. melanogasterFB:FBgn0039117 (cg10210 · CG10210 · Ski2/tst · twister · SKI2 · Ski2 · tst) · UniProtKB:Q9VCH8⌘
D. melanogasterFB:FBgn0038344 (CG5205 · cg5205) · UniProtKB:Q9VF56⌘
D. melanogasterUniProtKB:Q9VSE2 · FB:FBgn0002899 (mus(3)301 · hel308 · anon-WO0118547.354 · spindle-C · CG7972 · SpnC · spn-C · spindel · spnC · mus301 · cg7972)mutagen-sensitive 301 · spindle C⌘
D. melanogasterUniProtKB:Q9Y134 · FB:FBgn0001986 (CG4152 · br44 · l(2)k14422 · cg4152 · l.2.35Df · BG:DS09217.2 · BcDNA:GH07290 · l(2)br44 · l(2)k14423 · l(2)35Df)lethal (2) 35Df⌘
E. coliUniProtKB:P00582 · ECOLI:EG10746-MONOMER (ECK3855 · polA · resA · b3863 · PolA)DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease⌘
G. gallusNCBI:XP_419816 · ENTREZ:421790
G. gallusNCBI:XP_420565 · ENTREZ:422606
G. gallusNCBI:XP_428333 · ENTREZ:430782
G. gallusNCBI:XP_422924 · ENTREZ:425133
G. gallusNCBI:XP_428264 · ENTREZ:430713
G. gallusNCBI:XP_001233526 · ENTREZ:770195
G. gallusNCBI:XP_416549 · ENTREZ:418326
G. gallusNCBI:XP_420834 · ENTREZ:422892
G. gallusUniProtKB:Q5F463 (IPI00574020 · Q5F463 · RCJMB04_2m11) · ENTREZ:503574⌘
G. gallusUniProtKB:Q5ZMQ1 (IPI00599020 · RCJMB04_1h14 · Q5ZMQ1) · ENTREZ:427137⌘
H. sapiensENSEMBL:ENSG00000130997 · UniProtKB:Q7Z5Q5 (POLN · IPI00737463 · IPI00385298 · DPOLN_HUMAN · Q7Z5Q5)DNA polymerase nu⌘
H. sapiensENSEMBL:ENSG00000051341 · UniProtKB:O75417 (O75417 · IPI00794779 · POLH · DPOLQ_HUMAN · POLQ)DNA polymerase theta⌘
H. sapiensENSEMBL:ENSG00000112249 · UniProtKB:Q8N3C0 (IPI00430472 · HELIC1 · ASCC3 · HELC1_HUMAN · Q8N3C0)Activating signal cointegrator 1 complex subunit 3⌘
H. sapiensENSEMBL:ENSG00000162669 · UniProtKB:A2PYH4 (IPI00852603 · A2PYH4 · HFM1 · HFM1_HUMAN · IPI00374013 · SEC3D1)Probable ATP-dependent DNA helicase HFM1⌘
H. sapiensENSEMBL:ENSG00000163312 · UniProtKB:Q8TDG4 (HEL308 · IPI00152527 · IPI00889496 · IPI00647582 · Q8TDG4 · IPI00807650 · HL308_HUMAN · IPI00889766)ATP-dependent DNA helicase HEL308⌘
H. sapiensENSEMBL:ENSG00000039123 · UniProtKB:P42285 (SKIV2L2 · SK2L2_HUMAN · P42285 · KIAA0052 · IPI00647217)Superkiller viralicidic activity 2-like 2⌘
H. sapiensENSEMBL:ENSG00000206353 · UniProtKB:Q15477 (DDX13 · SKIV2 · W · SKI2W · SKIV2_HUMAN · IPI00414819 · SKIV2L · Q15477)Helicase SKI2W⌘
H. sapiensENSEMBL:ENSG00000144028 · UniProtKB:O75643 (U520_HUMAN · SNRNP200 · HELIC2 · ASCC3L1 · O75643 · IPI00168235 · KIAA0788 · IPI00420014)U5 small nuclear ribonucleoprotein 200 kDa helicase⌘
M. musculusNCBI:NP_084253 · MGI:MGI:2155399 (Polq)polymerase (DNA directed), theta⌘
M. musculusNCBI:NP_796188 · MGI:MGI:2444401 (Snrnp200 · U5-200KD · HELIC2 · Ascc3l1)small nuclear ribonucleoprotein 200 (U5)⌘
M. musculusNCBI:NP_067312 · MGI:MGI:1099835 (Skiv2l · Ski2w)superkiller viralicidic activity 2-like (S. cerevisiae)⌘
M. musculusUniProtKB:Q7TQ07 · MGI:MGI:2675617 (Poln · POL4P)DNA polymerase N⌘
M. musculusUniProtKB:Q2VPA6 · MGI:MGI:2176740 (Hel308 · Helq)helicase, POLQ-like⌘
M. musculusUniProtKB:Q9CZU3 · MGI:MGI:1919448 (Skiv2l2)superkiller viralicidic activity 2-like 2 (S. cerevisiae)⌘
M. musculusUniProtKB:Q6PB36 · MGI:MGI:1925237 (Helic1 · Ascc3 · ASC1p200)activating signal cointegrator 1 complex subunit 3⌘
R. norvegicusNCBI:XP_573637 · RGD:1560044
R. norvegicusNCBI:XP_228345 · RGD:1307995 (Ascc3)activating signal cointegrator 1 complex subunit 3⌘
R. norvegicusNCBI:XP_001062278 · RGD:1309795 (Polq)polymerase (DNA directed), theta⌘
R. norvegicusNCBI:XP_001070139 · RGD:1591429
R. norvegicusNCBI:XP_573636 · RGD:1593173 (Poln)polymerase (DNA directed) nu⌘
R. norvegicusNCBI:XP_214002 · RGD:1588599
R. norvegicusUniProtKB:Q499Q9 · RGD:1305984 (Skiv2l2)superkiller viralicidic activity 2-like 2 (S. cerevisiae)⌘
R. norvegicusRGD:1561120 · UniProtKB:Q4KLH1
R. norvegicusUniProtKB:Q6MG76 · RGD:1303059 (Skiv2l)superkiller viralicidic activity 2-like (S. cerevisiae )⌘
S. cerevisiaeUniProtKB:P32639 · SGD:S000000974 (YER172C · BRR2 · SLT22 · PRP44 · SNU246 · RSS1)RNA-dependent ATPase RNA helicase (DEIH box)⌘
S. cerevisiaeUniProtKB:P51979 · SGD:S000003220 (YGL251C · MER3 · HFM1)Meiosis specific DNA helicase involved in the conversion of double-stranded breaks to later recombination intermediates and in crossover control⌘
S. cerevisiaeUniProtKB:P47047 · SGD:S000003586 (YJL050W · DOB1 · MTR4)ATP-dependent 3'-5' RNA helicase, involved in nuclear RNA quality control both as a component of the TRAMP complex and in TRAMP independent processes⌘
S. cerevisiaeUniProtKB:P35207 · SGD:S000004390 (YLR398C · SKI2)Ski complex component and putative RNA helicase, mediates 3'-5' RNA degradation by the cytoplasmic exosome⌘
S. cerevisiaeUniProtKB:P53327 · SGD:S000003503 (YGR271W · SLH1)Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs⌘
S. pombeUniProtKB:Q9UT24 · GeneDB_Spombe:SPAC9.03c (spp41 · brr2 · SPAC9.03c)U5 snRNP complex subunit Brr2⌘
S. pombeUniProtKB:O60072 · GeneDB_Spombe:SPBC13G1.10c (SPBC13G1.10c · mug81)ATP-dependent RNA helicase Slh1⌘
S. pombeUniProtKB:O14232 · GeneDB_Spombe:SPAC6F12.16c (mtr4 · SPAC6F12.16c)ATP-dependent RNA helicase, TRAMP complex subunit Mtr4⌘
S. pombeUniProtKB:O13799 · GeneDB_Spombe:SPAC17H9.02 (SPAC17H9.02)TRAMP complex ATP-dependent RNA helicase⌘
S. pombeUniProtKB:O59801 · GeneDB_Spombe:SPCC550.03c (SPCC550.03c)Ski complex RNA helicase Ski2⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu