P-POD: Princeton Protein Orthology Database: GO3/Jaccard214

This family has 78 members: 8 Arabidopsis thaliana, 6 Caenorhabditis elegans, 9 Danio rerio, 1 Dictyostelium discoideum, 3 Drosophila melanogaster, 7 Escherichia coli, 7 Gallus gallus, 9 Homo sapiens, 10 Mus musculus, 15 Rattus norvegicus, 1 Saccharomyces cerevisiae, 2 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Jaccard214
78 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2005719 (F10A5_22 · AT1G75560 · F10A5.22) · NCBI:NP_565112.1⌘
A. thalianaNCBI:NP_189945.1 · TAIR:locus:2079859 (F22J12.30 · AT3G43590)⌘
A. thalianaNCBI:NP_200051.1 · TAIR:locus:2156647 (K24M7.12 · K24M7_12 · AT5G52380)⌘
A. thalianaNCBI:NP_195326.1 · TAIR:locus:2135139 (T19K4_150 · T19K4.150 · CSDP1 · AT4G36020)cold shock domain protein 1⌘
A. thalianaNCBI:NP_179702.1 · TAIR:locus:2047092 (F26H11_18 · AT2G21060 · F26H11.18 · ATGRP2B)GLYCINE-RICH PROTEIN 2B⌘
A. thalianaNCBI:NP_565427.1 · TAIR:locus:2827810 (T13L16_11 · T13L16.11 · AT2G17870)⌘
A. thalianaNCBI:NP_195580.1 · TAIR:locus:2121219 (CSP2 · AT4G38680 · T9A14.9 · ATCSP2 · GRP2 · GRP-2 · CSDP2)ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2 · COLD SHOCK PROTEIN 2 · COLD SHOCK DOMAIN PROTEIN 2 · GLYCINE RICH PROTEIN 2⌘
A. thalianaNCBI:NP_189872.1 · TAIR:locus:2078526 (AT3G42860 · F18P9.20)⌘
C. elegansWB:WBGene00003014 (lin-28 · F02E9.2) · UniProtKB:P92186 (LIN28_CAEEL · lin-28 · F02E9.2)Protein lin-28⌘⌘
C. elegansWB:WBGene00017210 (F07E5.5) · UniProtKB:P91223⌘
C. elegansWB:WBGene00000473 (F46F11.2 · cey-2) · UniProtKB:P91306 (F46F11.2 · cey-2)Y-box protein 2⌘⌘
C. elegansWB:WBGene00000474 (cey-3 · M01E11.5) · UniProtKB:P91398⌘
C. elegansWB:WBGene00019537 (K08D12.3) · UniProtKB:Q966I7⌘
C. elegansWB:WBGene00000475 (cey-4 · Y39A1C.3) · UniProtKB:Q9XTJ6⌘
D. rerioENSEMBL:ENSDARP00000076953
D. rerioENSEMBL:ENSDARP00000095293
D. rerioENSEMBL:ENSDARP00000015591
D. rerioENSEMBL:ENSDARP00000068867
D. rerioUniProtKB:Q803L0 · ZFIN:ZDB-GENE-040426-747 (lin28)lin-28 homolog (C. elegans)⌘
D. rerioUniProtKB:Q6NSP3 · ZFIN:ZDB-GENE-000629-3 (ybx1)Y box binding protein 1⌘
D. rerioUniProtKB:Q7ZUI6 · ZFIN:ZDB-GENE-031030-9 (zcchc9)zinc finger, CCHC domain containing 9⌘
D. rerioUniProtKB:Q801Z9 · ZFIN:ZDB-GENE-030131-5045 (zff9)zinc finger protein 9⌘
D. rerioUniProtKB:A7MD86 · ZFIN:ZDB-GENE-030102-2 (zcchc7l)zinc finger, CCHC domain containing 7- like⌘
D. discoideumdictyBase:DDB_G0293328 (DDB_G0293328) · UniProtKB:Q54BY8⌘
D. melanogasterFB:FBgn0035626 (EP(3)0915 · CG17334 · lin-28 · BcDNA:RE05342) · UniProtKB:Q9VRN5⌘
D. melanogasterUniProtKB:O46173 · FB:FBgn0022959 (p45 · p57 · Yps · CG5654 · YPS · yps)Ypsilon Schachtel · Ypsilon Schactel · Ypsilon schachtel · ypsilon schachtel⌘
D. melanogasterFB:FBgn0034802 (anon-fast-evolving-2B6 · anon-EST:fe2B6 · anon-EST:fe1B4 · CG3800 · anon-fast-evolving-1B4 · CG11716 · BEST:GM06241) · UniProtKB:Q8T8R1⌘
E. coliUniProtKB:P0A9X9 · ECOLI:PD03695 (b3556 · CspA · ECK3543 · cspA)CspA transcriptional activator⌘
E. coliUniProtKB:P36995 · ECOLI:EG12203-MONOMER (ECK1551 · cspB · b1557 · CspB)Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator⌘
E. coliUniProtKB:P0A9Y6 · ECOLI:EG12204-MONOMER (cspC · CspC · ECK1821 · b1823 · msmB)stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator⌘
E. coliUniProtKB:P0A968 · ECOLI:EG11111-MONOMER (ybjA · CspD · ECK0871 · cspH · b0880 · cspD)DNA replication inhibitor⌘
E. coliUniProtKB:P0A972 · ECOLI:EG12179-MONOMER (b0623 · msmC · cspE · CspE · gicA · ECK0616)transcription antiterminator and regulator of RNA stability⌘
E. coliUniProtKB:P0A978 · ECOLI:G6511-MONOMER (ECK0980 · cspG · CspG · b0990)cold shock protein CspG⌘
E. coliUniProtKB:P0A986 · ECOLI:G6825-MONOMER (CspI · b1552 · cspI · ECK1546 · cspJ)Qin prophage; cold shock protein⌘
G. gallusNCBI:XP_424900 · ENTREZ:427320
G. gallusNCBI:XP_424418 · ENTREZ:426807
G. gallusENTREZ:395731 · UniProtKB:O42395 (CNBP_CHICK · CNBP · O42395 · ZNF9 · IPI00582111)Cellular nucleic acid-binding protein⌘
G. gallusENTREZ:428206 · UniProtKB:Q45KJ5 (LIN28A · LIN28 · IPI00573980 · LN28A_CHICK · Q45KJ5)Lin-28 homolog A⌘
G. gallusENTREZ:421786 · UniProtKB:Q45KJ4 (LN28B_CHICK · Q45KJ4 · IPI00655492 · LIN28B)Lin-28 homolog B⌘
G. gallusUniProtKB:Q90650 (Q90650 · IPI00588677) · ENTREZ:396371⌘
G. gallusUniProtKB:Q91956 (IPI00587895 · Q91956) · ENTREZ:386575⌘
H. sapiensENSEMBL:ENSG00000169714 · UniProtKB:P62633 (IPI00430814 · CNBP · ZNF9 · CNBP_HUMAN · P62633 · RNF163 · IPI00430812 · IPI00430813)Cellular nucleic acid-binding protein⌘
H. sapiensENSEMBL:ENSG00000060138 · UniProtKB:P16989 (IPI00219147 · IPI00031801 · DBPA · P16989 · DBPA_HUMAN · CSDA · IPI00219148)DNA-binding protein A⌘
H. sapiensENSEMBL:ENSG00000131914 · UniProtKB:Q9H9Z2 (CSDD1 · LIN28A · LIN28 · LN28A_HUMAN · IPI00002948 · Q9H9Z2 · ZCCHC1)Lin-28 homolog A⌘
H. sapiensENSEMBL:ENSG00000187772 · UniProtKB:Q6ZN17 (Q6ZN17 · IPI00398131 · IPI00854717 · LN28B_HUMAN · CSDD2 · LIN28B)Lin-28 homolog B⌘
H. sapiensENSEMBL:ENSG00000065978 · UniProtKB:P67809 (YBOX1_HUMAN · YB1 · P67809 · NSEP1 · YBX1 · IPI00031812)Nuclease-sensitive element-binding protein 1⌘
H. sapiensENSEMBL:ENSG00000006047 · UniProtKB:Q9Y2T7 (MSY2 · YBX2 · CSDA3 · IPI00250153 · YBOX2_HUMAN · Q9Y2T7)Y-box-binding protein 2⌘
H. sapiensENSEMBL:ENSG00000187969 · UniProtKB:Q8WW36 (IPI00397484 · Q8WW36 · ZCH13_HUMAN · ZCCHC13)Zinc finger CCHC domain-containing protein 13⌘
H. sapiensENSEMBL:ENSG00000147905 · UniProtKB:Q8N3Z6 (IPI00871360 · Q8N3Z6 · ZCHC7_HUMAN · IPI00166710 · HSPC086 · ZCCHC7)Zinc finger CCHC domain-containing protein 7⌘
H. sapiensENSEMBL:ENSG00000131732 · UniProtKB:Q8N567 (Q8N567 · ZCCHC9 · ZCHC9_HUMAN · IPI00410284)Zinc finger CCHC domain-containing protein 9⌘
M. musculusNCBI:NP_613056 · MGI:MGI:2442912 (Zcchc7 · D4Wsu132e)zinc finger, CCHC domain containing 7⌘
M. musculusNCBI:NP_083434 · MGI:MGI:1922314 (Cnbp2 · Zcchc13)zinc finger, CCHC domain containing 13⌘
M. musculusUniProtKB:P53996 · MGI:MGI:88431 (Cnbp · Znf9)cellular nucleic acid binding protein⌘
M. musculusUniProtKB:Q9JKB3 · MGI:MGI:2137670 (Dpba · Yb2 · oxyR · MSY4 · dbpA · Csda · Ybx3 · MSY3)cold shock domain protein A⌘
M. musculusUniProtKB:Q8K3Y3 · MGI:MGI:1890546 (Lin28a · Tex17 · Lin28 · Lin-28)lin-28 homolog (C. elegans)⌘
M. musculusUniProtKB:Q45KJ6 · MGI:MGI:3584032 (Lin28b)lin-28 homolog B (C. elegans)⌘
M. musculusUniProtKB:P62960 · MGI:MGI:99146 (YB-1 · MSY1 · Nsep1 · Ybx1 · EF1A · dbpB)Y box protein 1 · DNA binding protein B⌘
M. musculusUniProtKB:Q9Z2C8 · MGI:MGI:1096372 (MSY2 · Ybx2)Y box protein 2⌘
M. musculusUniProtKB:Q8R1J3 · MGI:MGI:1916335 (Zcchc9)zinc finger, CCHC domain containing 9⌘
M. musculusMGI:MGI:1925802 · UniProtKB:Q505H6
R. norvegicusNCBI:XP_220618 · RGD:1305068 (Ybx2)Y box binding protein 2⌘
R. norvegicusNCBI:XP_001055840 · RGD:1589760 (LOC302399)similar to cellular nucleic acid binding protein 2⌘
R. norvegicusNCBI:XP_001074611 · RGD:1596368
R. norvegicusNCBI:XP_001066734 · RGD:1584540 (LOC683611)similar to lin-28 homolog b⌘
R. norvegicusNCBI:XP_216407 · RGD:1310467 (Zcchc7)zinc finger, CCHC domain containing 7⌘
R. norvegicusNCBI:XP_001069344 · RGD:1597432 (Lin28b)lin-28 homolog B (C. elegans)⌘
R. norvegicusNCBI:XP_233546 · RGD:1307592 (Lin28c)lin-28 homolog C (C. elegans)⌘
R. norvegicusNCBI:XP_575928 · RGD:1566408 (Lin28)lin-28 homolog (C. elegans)⌘
R. norvegicusNCBI:XP_345125 · RGD:1563742
R. norvegicusNCBI:XP_575816 · RGD:1563707
R. norvegicusUniProtKB:P62634 · RGD:621807 (Cnbp)CCHC-type zinc finger, nucleic acid binding protein⌘
R. norvegicusRGD:621056 (Csda) · UniProtKB:Q62764 (DBPA_RAT · IPI00208217 · IPI00231811 · Yb2 · Dbpa · Csda · Q62764)cold shock domain protein A · DNA-binding protein A⌘⌘
R. norvegicusUniProtKB:P62961 · RGD:61843 (Ybx1)Y box binding protein 1⌘
R. norvegicusUniProtKB:Q3ZAV2 (IPI00551815 · Q3ZAV2 · Ybx1) · RGD:1590933 (Ybx1-ps3)Y box protein 1 related, pseudogene 3⌘⌘
R. norvegicusUniProtKB:Q5XII6 · RGD:1307450 (Zcchc9)zinc finger, CCHC domain containing 9⌘
S. cerevisiaeUniProtKB:P53849 · SGD:S000005199 (YNL255C · GIS2)Protein with seven cysteine-rich CCHC zinc-finger motifs, similar to human CNBP, proposed to be involved in the RAS/cAMP signaling pathway⌘
S. pombeUniProtKB:P36627 · GeneDB_Spombe:SPAC13D6.02c (SPAC13D6.02c · byr3)zinc finger protein Byr3⌘
S. pombeUniProtKB:Q9HFF2 · GeneDB_Spombe:SPAC683.02c (SPAC694.01c · SPAC683.02c)zf-CCHC type zinc finger protein⌘
ProteinPublicationCurator Notes
UniProtKB:P53849 · SGD:S000005199PMID:21232131 Scherrer T, et al. Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins. Genome Biol. 2011;12(1):R3.The H. sapiens protein CNBP complements a homologous mutation in S. cerevisiae.
DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
OMIM (1)
ENSEMBL:ENSG00000169714 · UniProtKB:P62633#602668 DYSTROPHIA MYOTONICA 2; DM2;;MYOTONIC DYSTROPHY 2;;PROXIMAL MYOTONIC MYOPATHY; PROMM;;MYOTONIC MYOPATHY, PROXIMAL;;RICKER SYNDROME
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu