P-POD: Princeton Protein Orthology Database: GO3/Jaccard1193

This family has 23 members: 4 Arabidopsis thaliana, 2 Caenorhabditis elegans, 2 Danio rerio, 2 Dictyostelium discoideum, 2 Drosophila melanogaster, 2 Gallus gallus, 2 Homo sapiens, 2 Mus musculus, 1 Rattus norvegicus, 2 Saccharomyces cerevisiae, 2 Schizosaccharomyces pombe.

Interactive Java Applets: Notung Tree Analysis · Jalview Alignment

GO3/Jaccard1193
23 members.
OrganismProtein (Synonyms)DescriptionAmiGO
A. thalianaTAIR:locus:2047168 (NRPD3 · F26H6_5 · F26H6.5 · NRPE3A · RPB35.5A · AT2G15430 · NRPB3 · RBP36A) · NCBI:NP_179145.1⌘
A. thalianaNCBI:NP_179142.1 · TAIR:locus:2047198 (NRPE3B · RBP36B · AT2G15400 · F26H6_8 · F26H6.8)⌘
A. thalianaNCBI:NP_849833.1 · TAIR:locus:2025855 (F23C21_3 · F23C21.3 · ATRPAC42 · AT1G60850 · AAC42)rna polymerase i subunit 42⌘
A. thalianaNCBI:NP_176261.1 · TAIR:locus:2036494 (AT1G60620 · ATRPAC43)RNA POLYMERASE I SUBUNIT 43⌘
C. elegansWB:WBGene00007971 (rpb-3 · C36B1.3) · UniProtKB:Q93338⌘
C. elegansWB:WBGene00019275 (H43I07.2) · UniProtKB:Q9UAY9⌘
D. rerioUniProtKB:Q7ZV11 · ZFIN:ZDB-GENE-030131-6609 (polr2c)polymerase (RNA) II (DNA directed) polypeptide C⌘
D. rerioUniProtKB:Q6PHE7 · ZFIN:ZDB-GENE-040426-1495 (polr1c)polymerase (RNA) I polypeptide C⌘
D. discoideumUniProtKB:Q54SN4 · dictyBase:DDB_G0282339 (rpa40 · rpa5)RNA polymerase III subunit, RNA polymerase I subunit⌘
D. discoideumUniProtKB:Q54DH7 · dictyBase:DDB_G0292244 (rpb3)RNA polymerase II core subunit⌘
D. melanogasterUniProtKB:O97183 · FB:FBgn0026373 (l(2)k05605 · RpII33 · PolII · l(2)34Dg · 152117_at · lethal(2)34Dg · rpII33 · l34Dg · D-rpII33 · RNAP · polII · PolIIo · Rpll33 · RPB3 · br17 · Rpb3 · CG7885 · l(2)br17 · BG:DS00941.10)Pol II · RNA Pol II · RNA pol II · RNA Polymerase II · lethal 17 in the black-reduced region · RNA polII · pol II · RNA polymerase II · RNA polymerase II 33kD subunit⌘
D. melanogasterFB:FBgn0031657 (CG3756) · UniProtKB:Q9VMX3⌘
G. gallusNCBI:XP_414001 · ENTREZ:415635
G. gallusNCBI:XP_419502 · ENTREZ:421452
H. sapiensENSEMBL:ENSG00000171453 · UniProtKB:O15160 (IPI00005179 · POLR1C · O15160 · IPI00217386 · POLR1E · RPAC1_HUMAN)DNA-directed RNA polymerases I and III subunit RPAC1⌘
H. sapiensENSEMBL:ENSG00000102978 · UniProtKB:P19387 (RPB3_HUMAN · P19387 · A-152E5.7 · POLR2C · IPI00018288)DNA-directed RNA polymerase II subunit RPB3⌘
M. musculusUniProtKB:P52432 · MGI:MGI:103288 (Polr1c · Rpo1-1 · 40kDa · RPA40)polymerase (RNA) I polypeptide C⌘
M. musculusUniProtKB:P97760 · MGI:MGI:109299 (mRBP31 · Polr2c · RPB3 · Rpo2-3 · 33kDa)polymerase (RNA) II (DNA directed) polypeptide C⌘
R. norvegicusUniProtKB:Q5RJK9 · RGD:1309689 (Polr1c)polymerase (RNA) I polypeptide C⌘
S. cerevisiaeUniProtKB:P07703 · SGD:S000006314 (RPC5 · RPC40 · YPR110C)RNA polymerase subunit, common to RNA polymerase I and III⌘
S. cerevisiaeUniProtKB:P16370 · SGD:S000001283 (YIL021W · RPB3)RNA polymerase II third largest subunit B44, part of central core⌘
S. pombeUniProtKB:O94616 · GeneDB_Spombe:SPBC1289.07c (SPBC1289.07c · rpa42 · rpc40)DNA-directed RNA polymerase I and III subunit Rpc40⌘
S. pombeUniProtKB:P37382 · GeneDB_Spombe:SPCC1442.10c (SPCC1442.10c · rpb3)DNA-directed RNA polymerase II subunit 3⌘

No functional conservation results.

DescriptionSuffix
Sequences in this family.fasta
mafft aligned Fasta file.afasta
phyml newick file.newick
Notung rooted & rearranged newick file.newick.rooting.0.rearrange.0
Notung Homolog Table.newick.rooting.0.rearrange.0.homologs.csv
Send questions, suggestions, and comments to: yfgdb@genomics.princeton.edu